Array 1 173767-172781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAKL010000004.1 Deinococcus wulumuqiensis R12 scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 173766 37 100.0 30 ..................................... ATTCATATCTNNNNNNNNNNAAACGGCACG 173699 37 100.0 35 ..................................... CCGAAGGCGCCCCGAAGATCATGTTCGTCTGGAAG 173627 37 100.0 36 ..................................... AGTGTCTGGACACCGAGCGCGGCACGGTGCGCGGCA 173554 37 100.0 36 ..................................... GTGTAGATGACCCACTCATCGCCGTTGGGCAGCACC 173481 37 100.0 33 ..................................... AGTCAATCGGCGTCTGGTCGAAGGCCAGAGCGG 173411 37 100.0 35 ..................................... TCTGCCATGTACGCGGCGTAACCGGGCGTGGCGGG 173339 37 100.0 37 ..................................... GAGGAACTGACGGGGCGGTTCGTGTGGGCGTCCCTGC 173265 37 100.0 38 ..................................... TGCCGCTGCCGGAAAAACCCCGGCCTGAGCCTCAGCCG 173190 37 100.0 36 ..................................... TGGTCCATATGGACACGGCCATCAACAGCGGGCCGG 173117 37 100.0 37 ..................................... AGTTCGGGGCTGAGTAGGGCCTGGGCTTTTGCTTCGA 173043 37 100.0 43 ..................................... CATGCCCTGGAGTCAGGCCTTCGTGCTGGCCCTGATCGCGTTC 172963 37 100.0 37 ..................................... GTGATTCGCGGGGACTGGGGGCGCCGGTGAAGCCCGG 172889 37 100.0 35 ..................................... TGACCACCACGCTGCTGCTGACCAACCCCGGCCCC 172817 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 100.0 36 GCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAAC # Left flank : CCCTGCTCGTTGAGGCCGAACTGGGGCTGACTTGCCCCTATGGGTACTGGCACTCGAGCCGCACCCGGCAAACCCATACCGTCCCCATAGATACCCGATTGCGAAGGCGTACCCTTCAAGCGATTGCCGAAGTGCGCGCTTTCATTGAGCTTGAGCGGTGCCCGCCTCCCACCTCAAAAACGGTAAAATGCTTGGAATGCGAACTGAGGAACTTCTGCGGAGATACGCTGTGACCCGTTCGCAAAAGCTGAGGCTGCACGCAGAGCCGCCTGATTTGCGAAGCGTTGTCACGGCAATTTTGCCGCTTTTCGGTGATGAGCAACCCAGAGATCCGCTCCTCATGGAAAATAAGAGTGTGTCAGACACACCGCAAATGGCCCTATCCAACGTCTCTCCTGTCATTTGCGACCAACATGGACAGGCTATACTTTTGCCGTGATGGAGGCATCACGCGCTACATGACAGCCCAAATGAATTTGAGAAAACGCGTGAAATAAGCG # Right flank : CGCCTCGGCTCCCGCTTCTCCTCCACCTTCTCCGGGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACGTCTCGNNNNNNNNNNCTTGAACGCGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACGGCACCAGTCGCTGATTTCTCGCTGGGAAGCAGACGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACAGCCACGTCATCTTCTGGTGGCAGAAATCGGCAGAGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACGACTGACGCCGTAAACGTAGCCGGAATTGAGGGAGCCGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACGCTCAGGGCACGGTCATTCAGGGCAACGTGCCCGGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACAGCGCAGCACGCACGGCACGGTGCTGCTCACGCTCGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACCGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 2418-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAKL010000024.1 Deinococcus wulumuqiensis R12 41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2417 37 100.0 34 ..................................... TTCTCGCGCCGCCGCTCAAGCTCCATGGCGGCTC 2346 37 100.0 35 ..................................... CGGCCCGGAGGCGCGGCCACCGAACGTCTTGAGCG 2274 37 100.0 37 ..................................... TTCGCGCTGGTGGTCGCGTGCGCGGTCAACTGCTGCA 2200 37 100.0 35 ..................................... TCCTGCATCTTGGCGCGGGTCTCGGCAACCATCGC 2128 37 100.0 35 ..................................... TGCCGGGGGCAGGTAGGGGCCGACCAGCTCAGCCG 2056 37 100.0 34 ..................................... CGGGCGAGTGCCTAGCGGCGAGCGCCTTCCCTGC 1985 37 100.0 35 ..................................... TCCTGGCACGCCCGAAAAGCTACCCTTCCTCTTTC 1913 37 100.0 34 ..................................... ATAGTTGACTAACCTCATAGTCTGCCCGCTGGGT 1842 37 97.3 33 .....................A............... CCCCGTTGCTCTGGGTGGAAAAGATACTCTGTT 1772 37 100.0 36 ..................................... TGGCAGTTCGAGGCGCAGACCAAAGCCGCCCGCGCC 1699 37 100.0 33 ..................................... CCCCGGACCTCCAGCTCCAGCCCCAGCACGTCA 1629 37 100.0 19 ..................................... ATTCGGCAAGCATACTGCC Deletion [1574] 1573 37 100.0 34 ..................................... CCGGCTGCCACGCCAGAACCACCAGATACCCGCC 1502 37 100.0 34 ..................................... ATAGCCTTCAGGCGTCAGCTTCTTCGCGCAGTCG 1431 37 100.0 36 ..................................... TGGTAAGCGACGCGCGCGCGATCTTCGCGGCGCAGG 1358 37 100.0 34 ..................................... CCTCAGTTGCCAGGGCCGTTAGGTCGCGCTGTAG 1287 37 100.0 35 ..................................... GACAGAGACCCCGTCCAGAGGACTCAGCGGGTCCG 1215 37 100.0 36 ..................................... ACTGTCGAGGCGAACGATTATGACGACGATCGCCGG 1142 37 100.0 34 ..................................... AGGGTCAGGGTGCGCTGGCCCTCGGCGTCGGCCA 1071 37 100.0 33 ..................................... ATCAGGTCAAGGTGCTCAGCCATGCGAGCCTCC 1001 37 100.0 33 ..................................... AAAGGCAGCCCCGAGCGCGTCCGCTTCGGCGGC 931 37 100.0 34 ..................................... TCGCCGAGGCCTGCCTCGCGGTGGGCGACTATGC 860 37 100.0 35 ..................................... TCTCTGATTCTGTTCTGAACTTGGATTTGGCCTCT 788 37 100.0 34 ..................................... CATCGGGAGGAATGAACCCGCGGAGAGGTCGAGG 717 37 100.0 37 ..................................... ACGATGTCGCGGGCAATGACCACCACAGCGTCACGGG 643 37 97.3 34 .........................A........... ACGCCCTGGCTGGCCCGCATCGGCGCCCTGTTCG 572 37 100.0 33 ..................................... ACCAATCCGATGCTGGCGGCCCTGGCACCGGCG 502 37 100.0 33 ..................................... CCGACAGGCGACAGCGTGACGATGAACGCCGCC 432 37 100.0 35 ..................................... AAATGGGGGCAGAATGACCAGGGGATTAGAACAGG 360 37 100.0 35 ..................................... TAGCTACCGTAAAAACGCCCGCTGGCCGTGCCCTG 288 37 100.0 33 ..................................... TCAGCTAGCCCGCGCAAGTGCCGCCCGCCTGGG 218 37 100.0 34 ..................................... CCATGACGTTTGACCCGAGTGCCCTGCCCCCCAT 147 37 100.0 34 ..................................... ACCGATACGGAGCTGTCCGCCGCTCTCCGTCGTG 76 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 34 37 99.8 34 GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Left flank : ACACGCGCATGGAAAACGCTACAGAGGCGGAAC # Right flank : CCTGCATGATGCCCACGCTGAGGGTTGCCCTGTCCCGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //