Array 1 7736-7979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPH01000110.1 Leptospira interrogans strain 56624 Contig110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 7736 29 100.0 43 ............................. TTTTTGTGCCGCTTGGACTCGTAGTACCGTCCGAGGTGCTCAA 7808 29 100.0 44 ............................. AGAATCTTCTCGTGAAATACCAACCGATATTTTAACGTGCTCAA 7881 29 100.0 41 ............................. CGAGGAATCCATCTTTATCATCTTAGTATACTAGTGCTCAA 7951 29 72.4 0 ..............CCGA..T.TG.A... | ========== ====== ====== ====== ============================= ============================================ ================== 4 29 93.1 43 CGCCTAACGGCATCAAAGTTATATTCAGT # Left flank : AAAGTTTAACTCAATGACGTTCGGAATGGACATACAATATACTCGGAGAAATTCATTTTTCGGATTCCATTTTATTTTTTAAAGATAAAATATTTTTAGAATATTCTAAAAATAAAATAAAATATAATTTTAAATACCCTAAAAAACATGCCATGTTTATAATATGATATACCTTCTCTATAGTATTTGGAAATTTCTGAAAGGATCGCCTAAACGGCATCAGAGGTAGATCGAATTTGTGTAACCAGTTCTTTCAATTACAGTGGCAAAGTGCTGAGGAATATGATTGTCAGTACAAATTTATGTTTACTACTGTAATTAGGTATTTTCGATTCTTACCCGAGGAGATCTCCAGAATTCACTTTTTTTAAAGTGGGAGTTCCCACATTTCTTTGAACAAACTACTGTTTTTCGGAAAAGCAGTAGTTCCTACATTTTACCTGTTTGCACGTTTGGTGCGAAACAATTTGGGCTAAAACAGATCTTCTCTTCGTCTAAAT # Right flank : TTGACTTAAGAGACGCAGAAACCTTCTTTTTTCAAAGTGGGAGTTCCCACATTTCTTTGAACAAAGTACTGTTTTTCGGAAAAGCA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCTAACGGCATCAAAGTTATATTCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 98-748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPH01000298.1 Leptospira interrogans strain 56624 Contig298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================================================================================================================= ================== 98 25 84.0 50 .CG.G.....T.............. AAAGAAACAGGTCTCTTAAGTTTAGCACCTGCTGCAGTACTGAATATAAC 173 25 100.0 46 ......................... CCGATGATTTTCAAAACTACGGATCAGGGAACGGTCTGAATATAAC 244 25 100.0 47 ......................... GAAAGATAATCGTTACAGTTGTAACGGAATCGAATTCTGAATATAAC 316 25 88.0 167 ...................T..A.T GAAGAGAAGATTTGTTTTAGCCCAAATTGTTTTGCACAAACGTGCAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTATTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGTGTCTCTTAAGTCAAACTTACAAAAAT G [332] 509 25 84.0 46 CGG.......T.............. TTAAAAGTAAATGGGGTATAACATTAAATTCTTTTCTGAATATAAC 580 25 96.0 47 ..........T.............. AACCTTCCGGATGGAACTGTCATTGAGACTTCAGTCCTGAATATAAC 652 25 100.0 46 ......................... ATTTTTATGCCGCCAAGACATGGAAAATCTGAACTCTGAATATAAC 723 25 84.0 0 ..........T........T..A.T | G [739] ========== ====== ====== ====== ========================= ======================================================================================================================================================================= ================== 8 25 92.0 64 TTTGATGCCGGTAGGCGTTGAGCAC # Left flank : TGCTTTTCCGAAAAACAGTACTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAAT # Right flank : GAGGAGAAGATTTGTTTTGATCGCAATTGCTCCGTACAAAGGGCACAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTACTTTGTTCAA # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-2.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGATGCCGGTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 790-106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPH01000045.1 Leptospira interrogans strain 56624 Contig045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 789 36 100.0 36 .................................... GAGAGTAGTGGCCGGAAGATACGAACGACGAACCTT 717 36 100.0 37 .................................... CTCGTTATGGTTCTACGAACCAGATTCCAGAGTGTCG 644 36 100.0 36 .................................... ATTATTTACCTTATCGTTTCCTTTATGAATGGGAAG 572 36 100.0 38 .................................... CTTTCTAAAATTCAATCCAAGTCTGGAGAACCTGGAAC 498 36 100.0 34 .................................... TTTTAGACGGGAGCATTCCCGTTTCCGCACTCAA 428 36 100.0 35 .................................... AAAGCTGACCAACCCGACTTTTGTTGACTTGACTT 357 36 100.0 36 .................................... ACAAAAGCAGCATATCTAGACTTATCCAAAATAGAT 285 36 100.0 36 .................................... CTCAGCGCTTTTTCTAAATTAGTGGTATAAGCTAAT 213 36 100.0 35 .................................... TTCGAAAGTTTTTGTCGAAATCTAATTCTAAATCC 142 36 91.7 0 ..............................T..A.T | G [113] ========== ====== ====== ====== ==================================== ====================================== ================== 10 36 99.2 36 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : AAATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATGATTGGCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT # Right flank : TGAAGAGAAGATTTGTTTTGATCGCAATTGCTCCGTACAAAGGGCACAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTACTTTGTTCAAAGAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //