Array 1 5795-6024 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASGQ01000011.1 Thermotoga neapolitana LA10 Contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5795 30 100.0 37 .............................. CTTTATCAGATGATCAAAAGGCTTGAAAAGGAGGATG 5862 30 100.0 37 .............................. AGTCCAGAGCCAGAGCCATCCACGTTCTGGAGTTTTG 5929 30 100.0 36 .............................. CCGCATAGTCCAGGTCAGAAAACGGCCCTCCGATGG 5995 30 96.7 0 .............A................ | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TACGAATGCTCTATGAGATCTTCTCTATCCAGAAACCTCTCCAGTTCTCTGGAAAAGAGTTCGCAGTCTCTCACACTCACGTATCCCACCGGGTTGTCTATAACGACCCTGAGGACCCAGCCTCTGCTTTCTCTTCTGTACTGTATGTCGAAGATTTCCAGGCCTTGCTTTTCAGCAATTCTTTCCGCTTCTTTTCTAACCTTTTCTACAATCATCTCTTCGAACATACTATCAACCACCCCCTAGTGAACGAAAAACCGGGACACGAAGTCCCGGCCTTTCTCTGGCGGAGAGGGTGGGATTTGAACCCACGGGTGGCTTTTGGCCACCACACGCTCTCCAGGCGTGCGCCTTAGACCCCTCGGCCACCTCTCCTCTCCGTACCAAGAAAGTATTATACACTTGTTTTTTCAATAATTCAAGAGGAGCGTGTTTGTTTTTTTAATTTCATGCATTTGAAAGGAGAACCGAACAGAAAGATTGAAAAATTTCTATACTTT # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAAAGCATATCAAAAAGCAAGAGTATATGAGGACATACAGAAGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGACCCAGTCAAGTACTGTTTGGAAAAATGGAATAAGGGAGCCTAGGTCAGGCTATTTCGGTGTGTTTTATGGGAAAATCAACTAGTTCCTGTTTTCACAAGTTTGTTTAAAAAGGTACTCCTTAAAAGGTTAGAGGCTAAGTATGTGGTTTCTTTATTTGTGCCAGATACATGAACACAGATGAAGACATATTCTCATATCCTATTTCATATTCTCGCTCACTATTCCATTTTCCATGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCCACATCCTTCTTCTCATGCCCGTTACAATCACCACCCGCTTTGTGAATAAATGGAACTTACCGTGGTTTAGTGAATAAAAAATAGTTGCTAGCATCTTA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 474-113 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASGQ01000015.1 Thermotoga neapolitana LA10 Contig08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 473 30 96.7 36 .............T................ CAAGATACGAGATTTTCTTGTGCTCCTTGTCTCCCG 407 30 100.0 36 .............................. CGGCGGAGCTGTTGACAAGATTGACCGGGATCGAAA 341 30 100.0 36 .............................. TTACGTTATGCCCGAGATGTCATAATCGGGCTCATA 275 30 100.0 37 .............................. GTAGATGCAAGGCTCAGGTTTGCCTCAAGAATAGGAG 208 30 100.0 36 .............................. GCTCACATATGCCTTCACAGGGTATATCTGATTCTC 142 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTCCATACCTCAAAGGAAGTATTGAAAC # Left flank : TCACGGTACTTCAGGGGTTTATAATTCTGTTTTTCACGTACTTTCTGGCGGAGAACCTGAAGATCTCCGGTCTGATACCGGCTCTCATCGTCGGTTTCCTCATGTCCGTTACGATCGCCAGCTTTGGCATAGCACTCGCCCTGAAAATGGAAAGCACAGAAGGTTTTCAGATGATAATGATGACACTGATGATGCCTCTGATATTCCTGAGCGGAGCCATGTATCCGATAGACTCCATGCCGAACTGGATGAAAGCGATCGCCTACATCAACCCACTGACCTATGCGGTCGATGCCTCAAGAGGTTACCTGGTTGGATCACACGTGATGAAGTTTTCCTTTGGAATGGACTGGGGCATTTTGAGCATACTGATGGTCGTGGGACTTCTTCTTGCAACAGAGAGTTTCGAAAGGGCAAGGATAAGTTGAAAACGATCTTTCAGAATAAACAGAGGCGGGGATTTCCCCGCCTTTTTTGTTTTTGGGTGGTTTTCATACTTC # Right flank : CCCGATGGATTTCAAGGAAATTATACCACAAAGCATATCAAAAAGCAAGAGTATATGGGAACATACAGAGGATATTTCATCACAGGTGATTCTAACACACAGAAAGACCCAGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCAAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 44567-44934 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASGQ01000001.1 Thermotoga neapolitana LA10 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 44567 30 76.7 36 AGGGTT...............T........ CGAAATCGTGGTTTACTTCCAGAATGCCGGTGGATT 44633 30 93.3 39 .............A.......T........ GTGCTGTAATAGGATTTTTCCTCAGAAAGAAACTTTTTG 44702 30 93.3 37 .............A.......T........ CAAAAGAGACTTTCCCCAACCACTCTCCAAACCAGAA 44769 30 100.0 36 .............................. TTGGAAACTTGGGAAGGAGGAGTCTTGTTTGGTTTA 44835 30 100.0 40 .............................. CAAGAACGAATCGATGCCGTATTCGTTCCGTGTCAGAACG 44905 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 93.9 38 GTTTCCATACCTCTAAGGAAGGATTGAAAC # Left flank : CCAGAGCCCTTCCACAGTGCAGGAACGTCCACAACAGCAGTTTCCACAGGAACGTTCCATTGACGACAGATGTCTTCTACGAATTTTCTGTCCCTTTCTGAACTTTCTCTTATTCTGTGATCGAGATGAGCACCCAGAACTTCGATCTTCAAAAGGGGGGAGAGTTTCTTCAGGATGTACAGGAGGGTCATCGAATCTATTCCACCGGAGACGGCAACGAGAACAATGTCACCTTCACCGATCAAGCGATTTTCCTTCACGAATTCTAGGAACCTTTCCTCAAATTCTTCGGTAATGTTTCACACCCCTCTATGAAAAGAAATGGAGCCAGCGGTGGGACTCGAACCCACAACCTGCGCATTACGAATGCGCCGCTCTGCCGGTTGAGCTACGCTGGCCTCCCTCTAGTTTCTATTTTACCAGCAGGTGGGAGAATTTCAAGACCGGTTGGTAAAAGATTCCCCAGTGAGAGTATGGGGAGATAATGAATGTTTTTCAAA # Right flank : CGTTGGATTTCAAAGAAATTATACCACAAGGCATTTCAAAAAGCAAGAGTAC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGGATTGAAAC # Alternate repeat : GTTTCCATACCTCAAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 329-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASGQ01000004.1 Thermotoga neapolitana LA10 Contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 328 30 93.3 36 ....T........A................ GAGGTGAAAAGAAGGCTGTCCTCTACCCCCTCCAGT 262 30 100.0 37 .............................. GTATATCACAAAAAGGCAAAAAGAGCAGAACTCACAA 195 30 100.0 37 .............................. CCAGAATTATTTCATCAGAAACACCAACCAATTTTTC 128 30 100.0 36 .............................. CAGACTCGCTTTGAAAATGCACGGCTTTGACGTGGA 62 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : ATCATGCTGGTATCCGTTGTTGAAAGAACAAGGGAAATAGGCATAAAGATGGCAATAGGTGCCTCAAGGATCAGAATTCTCATGGAATTTCTTGTGGAAAGCGTTGTTATCACCTTCGTTGCCGGTGCTATAGGAGTTGCCCTGGGAATACTTGGATCAAACACGATCGTCAACACCTTTGGAAGCTCCTACGGATTGAAAGCCTTCGTTGATCCCTTTTCTGTGATCATCGCTTTTGGTGTCTCCGCGAGCGTTGGGTTGTTCTTCGGGTTCTATCCTGCATACAGGGCCTCCAGACTGAGCCCAATAGAGGCTTTGAGGTACGAATGAACCTCCCCCTGCACTCAACATGGGTGCAGGGGCTTTTAAACAAACCGAACCTTCCTGATGAATTTTCCCCACAAGAGCATTCCCATCTGATTGTGAGGATTTTCTTACCGTTTCCATACCTCAAGTATTGAAACATTGCGTACAAGGCCGGGTTGGTGGGAAATATTCAT # Right flank : CATGTCTCTACCGCCACTCCGTCTGGAACAATT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 2 39464-39892 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASGQ01000004.1 Thermotoga neapolitana LA10 Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 39464 30 86.7 35 C............T...A...G........ TTGACATTGTCAAAAGAACGTGGCACTAAACAACG T [39469] 39530 30 96.7 36 .............T................ GATTAGTTTTTACCATGTATTGGTAATCTTGTCAAT 39596 30 100.0 39 .............................. GGGAGTCCTACGTTGGATATCCACAGACGGCAGAGTACA 39665 30 100.0 37 .............................. GTGGAGAAGGCTTTTATCTCAATGGATATCGTTGGTA 39732 30 100.0 36 .............................. CGCGAAAGCAAAACTCCACGCCCTCAAAGCGCCTTT 39798 30 100.0 35 .............................. TCAGTTCGAACACAACCTGGCGACGTTTGTCTCGT 39863 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 97.6 36 GTTTCCATACCTCAAAGGAAGTATTGAAAC # Left flank : ATCTCTTTCACAATTTCGGATATACGTTTTCCTGTCTTTATTTCCAGTCCCTTTGAGAGATTCAGAACCATCGAAGGTTTTTTCGAAAGCCTGGAAAGATGTTCCCTTACGTGCTGCACAGGGATCGCTATCACGAGTATGTCGGTGCTTTTCAGTTCGTCGAGATTGTTCGTCGCTCTGACAGAGATTTCCATTTCATCTATGTAAGGACTGGTGTGGGAGTTGTTTATAAGATCTGCGATTTCCTTTCTTCTTGCCCACAGAATCACTTCTTCTCCGTTTTCCTTTAAAAGTTGAGCAAAGACTGTCCCCCAACTTCCAGCCCCGAGAACGAAAAATCTCATCTTTCAGCCTCCCTGAACACTTTCTATCTGGAATTTTAACAGATTGAAGTATTGAAACAGGATATCCCATACAGGGAGCAACACAAGGAGGGTATCGAAACATGGATTTGCAGTATGCGTGGGAAGGATTTTCATATCTCTTTGGAGCAACAAAAT # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAAAGCATTTCAAAAAGCAAGAGTATATGAGAACATACAGAGGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGGCTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCATAGAAAGCCTAAAGAAAGGCAAAATCGAAAGATAAATTATCCTAACCTAGGTCAGGCCATTTTGAGTTGTTTTATGGGAAAATCTACTAGTTCTCATTTTCACAAATTTGTTTAAAAAGGTACTCCTTAAAAGGTTAGAGACTAAGTACGTGGTTTCTTTATTCATGATAGATACACGATAGAATATGAAGAAATATTCTCATACCCTGTTTCACATTCTCGCTCATTATTCCATTTTCCATGCATACATTACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCCGTATCGCACATCAGGAGTCAGTTACAATCACCACCCACTTTGTGAA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCAAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 787-356 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASGQ01000007.1 Thermotoga neapolitana LA10 Contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 786 30 83.3 36 ..AAT.........G....T.......... TGCTAATTGTAAAAGAGAAGCCTGGCTCATGGCTCA A [784] 719 30 96.7 35 A............................. AGAATTCCCAAACGCTTACTTCACGCAAAGAAAAA 654 30 100.0 40 .............................. TCGGTGCCGTCATGTCCTACCATATACGACAGTGTCCTTT 584 30 100.0 36 .............................. GAGGTGGAAAGAAGATCAACCCTCACCCCCTCAAGA 518 30 100.0 36 .............................. AAGGCAACGTTCTGAGATTCACACTTACACGAAACA 452 30 100.0 37 .............................. GAGTTCGAGGTTTGCTCCGGCACCGTGAGGAACTACG 385 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 97.1 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : ATCTATCCTTTTCTGCCCTTGTTAAAACAGCGCTTCCCATGATTTTAAAGGTCACCGTTTTGGATGTTATGATCTTTGGAACAGGAAGATCCACACCTGCAACCTTCAATCCGTTCATGATTGAATCCTGCGAAACGATGTAGTTATATAAATAACCCACCATCTGGGGAATAGAGGAAGAAAAATTAAAAAAAATAGGAGACTCAAAGATTATCGAGTCTCCGGAGATATCTTTTATTTTGTTGAAACCAACACTGAAGACATAGGGTTTTGGTATTCGATCGTGAGAATTAACAATTTCTTCAAACGGTGTACGCTTATACACTTGCTTCAATAGAGACATAAAGATTCTTCTGTAATCAGCAGGAAATTTACCCTCAGAACCACTTTCGGGCTGGATTTTAACGAATATTCTCATATTCAATCCCCCTGCCTCCCCCGGTACAACAGGATTAGGGATGAGGATGTTTTGAGGTCAGAGCACAGGATACTTTTGGTGG # Right flank : CCCGTTGGATTTCAGAGAAATTATACCACAAAGCATTTCAAAAAGCAAGAATATATGAGGACATACAGAAGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGATCAAGTCAAGTACTGTTTGGAAAAATGGAATAATTACATAGTCAATAGAAAGCCTAAAGAAAGACAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGGCATTTTGAGTTGTTTTATGGGAAAATCAACTAGTTCTCATTTTCACAAATTTGTTCAAAAAGGCACTCCTTAAAAGGTTAGAGACTAAGTGTGTGGTTTCTTTATTCATGATAGATACATAAACACAGATGAAGACATATTCTCATA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 8961-10831 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASGQ01000007.1 Thermotoga neapolitana LA10 Contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 8961 29 100.0 38 ............................. GCACAAATGTGTGTGTGTCGGCGTTTTTGTGGCGCCAG 9028 29 100.0 36 ............................. GAAACTGCCCACGCCGTACCAGAGCGTTGGCGCCAG 9093 29 100.0 36 ............................. GGGGATTACTCCCCGCTAAACTCTACCGCTATCCAG 9158 29 100.0 36 ............................. AAGCCATCAGGACAGAAATAGACACGATAGCGCTCA 9223 29 100.0 38 ............................. ATGACATTTATAAACTATTTCATTCCAGGGGATTACTC 9290 29 100.0 37 ............................. AGCTCTTTCGATGCGACAGTCGGCGAGTATGGAGTGT 9356 29 100.0 36 ............................. CTCTACCCTCAATTAAGATCGACTGTCACATATCAA 9421 29 100.0 37 ............................. TTGTAACCAGCCACGGCGATCTATCTGCCCTGTGAAA 9487 29 100.0 37 ............................. CAATCTAGAAGGAGGGGATTGAGATGGTCAAGTATGA 9553 29 100.0 36 ............................. ATTCACAACTATATCTATGTGTTCGAGTGTAATCTC 9618 29 100.0 38 ............................. AAGATAAGAATCTTCACCTTAAATCTCCTCCCACACTA 9685 29 100.0 36 ............................. GGCGACAGAAGCCGCCAGTGTCGTTTGCAAACTGCG 9750 29 100.0 36 ............................. GTAGGGAAGCTAGAGGTGGTAGGATGAGTGAATGGA 9815 29 100.0 38 ............................. CAATCTTCTCTAACTCATTGGCGTTCTGAAAGATTTCA 9882 29 100.0 36 ............................. ATCTAGATAGAGGACATTTATAGGGTCTCGTGTTTT 9947 29 100.0 37 ............................. CGTTCTGCAGGGGGTCTTTTTCAATCTCCCTGTCCAG 10013 29 100.0 39 ............................. CTATATGGACAGACTCCTATATCCGCTTCCTGTATGAAA 10081 29 100.0 38 ............................. TTCCTCCCTTACCTCATCGTGATGCGCACACCTTTCTG 10148 29 100.0 36 ............................. TTTTCTTGAAGTCTTCCTCTACTCTTTTTTTATATC 10213 29 100.0 36 ............................. TGATAAAAAAGGAGTTCGTTGAAAAGCTGATGAAAA 10278 29 100.0 37 ............................. CTTTACCTCGTGATGAAGGCGGGGGTAGGTATATCCG 10344 29 100.0 36 ............................. TCTATACAATTTTATCTCTTTGAGGGTGTTGGCGCA 10409 29 100.0 36 ............................. TGTCTTCTCTCCTATCCGCCTGCCGTTTTTGGGAAT 10474 29 100.0 38 ............................. TGCTATCACTTCCTTACCTCTGTATCTCGTACTCGATC 10541 29 100.0 37 ............................. CTTGAGAAGGCTGCTGCACAGGCTGACGCATGGATCG 10607 29 100.0 36 ............................. ATGGTCGGGTCATTCCCCTCCTTGTCTCTGAACAAC 10672 29 100.0 36 ............................. CAGAACTCCTTCCACCTGTTCACCGCTGCTTTGAAC 10737 29 100.0 36 ............................. TGCGGTGTGATAGGTCACACTCCCACCTCACACAAC 10802 29 93.1 0 ..........................T.G | A [10827] ========== ====== ====== ====== ============================= ======================================= ================== 29 29 99.8 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : GCTTCAACAAACCATTCTTCACAGGAAATTGAAAAGGAAAATTAAATATCAATCTCTCATAAGGCTAGAAGCATACAAAATCATAAAGCATTTGCTTGGAGAGGATGAATACAGGCCTCTTAAAGTGTGGTGGTGATAGTGGTAAAGGTTATACTGGTCTATGACATTTCAACAGAGACCAAGGAAGGTGTTAAGCGTTTAAACAAGGTGAGAAAAATTGCCAGGAGGTATCTTGACCATATACAGAAATCTGTCTTTGAAGGTGAACTGACAGAAGGAGAGGTCGAGAAATTGAAATTCGAATTATCATGTGTTATAGATAAGAACGAAGATTTCGTAATAATCTATAAAATGCCGCCTTCCATTATGATGGAAAGAGACTTTCTAACGAATACAGAGGATCCCTCCTCGAATTTCATCTAGACAAAACTGGAGGTTTGACGCAAAATCTGTTCAAAAGAATGGTTGTTTCATGCTTTTTTACTAAGAAAATAACTGCG # Right flank : GAATGGTGGAAAAATGCCAACTGTTACTCTATTCCTCACAAACAGCATACTAAAGCAATATTTTCTGGTTCATCGTTTTTGAAGATCCAGAAAGACCGATCGGAAGTTCGGAAAAAAAGAATATAAGGGAAAGATTCATAGAAATGCTCAAAACCTATGGGCTGGGTGCGAAGACGAATTATGGATATGGCCGATTCGATGATATTTTATGATAAGATTTAAAGAAATTGTGATACAATCTCAGGTAAGGATTCCGAACTTTTTGAGATCTCGAAGAGAACGTGCCACGAGCCTGGAAGGCTCTGGCCGTTCTTTTTTTTAGGTGGGGGGAACATGAAAAACGGACGCTTCGAGTTCTTGAAGAGGGTCTTGGGTTCCATTCAGAGTATTCGAGGGTTTGTCCTTTTTGAAAGTGTGGGCGGAGAACTTTCTGTGAAGACGTCGGTTGGGAAGGTGCCCCTCTTTTTCAAAGAAGGTTTTTCTTTCACAACGGATGAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //