Array 1 3814-3972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGMN010000034.1 Clostridioides sp. ES-S-0108-01 CD-ESS00010801gDNAQiagen-xx-EN-USA-2019-093-JS_115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3814 29 100.0 36 ............................. TTAGATTTTAGAATCGAATATAAAAAATAAGCTAGA 3879 29 100.0 37 ............................. TAATTAAGTCTATCGTAATGTAGAGATGAAGGGTCAA 3945 28 82.8 0 ...............T....-.CT....A | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 94.3 38 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATGTAGTATACAAGATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTAGTTTTGAGGGGGATTAATACAATGCGTGAAAGTTTACTTAATGAGTACAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAGTTTGCTACATTATTATATAAATTAAAACAGAATGATGAAGAAAAATTTCAAGAATATGCAGAGATATTGAGAGGTATTCTTAGAGAACAAGAAGAGAGAGAAAATAAGTAAATAGAATAGATAAAGCAATTGGATATTCTATTGTTTCAAGTGCTTTGTCTGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGTGCGATTTTTCTACTCAAGTATGGTTTAACAGTTGAGATACAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTATTATCCGCTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGAAGATACTCAATTTATTTTGGG # Right flank : ATTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAATTATGTGCTATAATAGTTGTAAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTGATTGGCGTATTAGCTAGCTTAACAGCTACTCTAATAGCTTACGTAATTGGTAAATTAATCAAAAAAGCAAAAAGCCACTCTCGTGCAAAGAGTGACCTAATAGTTGAATTTAAATTTATGTTTAAATCCAAGAAATGATTGAGTTTTAATGAACTCCACTCTACGACTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTGACTATAATATTTTTTCTAAACAATAAAAATATGGAATTTTTTATACAAAATAATG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 515198-516016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGMN010000001.1 Clostridioides sp. ES-S-0108-01 CD-ESS00010801gDNAQiagen-xx-EN-USA-2019-093-JS_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 515198 29 100.0 37 ............................. CGGACTTTAACTGGTTTTATGCAACAATATAACGCTA 515264 29 100.0 37 ............................. TCCTAGTGATTTTGCTAAGTTATCTAATTTAACTAAG 515330 29 100.0 36 ............................. GCTTTTAGAACAGGCTTTTCTTTATTAGTTAGAAGC 515395 29 100.0 37 ............................. TATACATACTTGTTATATAAATCATTTTCTTTAACAT 515461 29 100.0 37 ............................. TTTGTATATAAGAGAGAGTACGATTTGACTGGATATG 515527 29 100.0 37 ............................. TTTTAAGCACGTTATAATACATTCGTCTTATGTTTGT 515593 29 100.0 36 ............................. ATGTTATGAAAGGTTTTAAATATACCACACTTCATC 515658 29 100.0 38 ............................. CATATGACATCTTTTATATTATCTATATTAACTTTTAT 515725 29 100.0 37 ............................. TTGAATAACTTATCTGCTTCCGCCTGTAAATTATCAA 515791 29 100.0 36 ............................. ATCACTAGATTGTGTTCTTGTTTTATCAGCAATAGT 515856 29 100.0 37 ............................. CAACTTCTTGTGCTACTTTCTTAGCTTCTTCTAAACT 515922 29 100.0 37 ............................. GATGAATTACATGCACATAGGACTAACCAAGTTTATA 515988 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTGACAAAACTATTTTTTAGGTTTAACTGACAGTCAGTTTTTTTTATGTAAATAATATTTTGCTTAAATTGTCAGAAGTCTTTTTATCTGTTTCTTCTAAATGAGAATACCTATACATAGTTATTTTCATTTAAGATAACTTTTTGTTGGGGGTATATGTTTTACAGAAAAGAAGATAATTATATTAAATATTTTAGAAACCTAAAAAGAAAAAGGTATTATTGGAATAGAGAGTATAGTTAAGCATTTACAAACATATAGATGCTCTTACTTTGCTAAATTATCCCATTTTTATTTTATAATGTGAGTTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGAGCGATTTTTAAGATAAAGTAGGGTGTAACAGTTGAAATATAAAGCTTTGAAAGCATGTGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAATTTAAGAGGATGGTATATGTATAAGCGTTGGAAATACTCAATTTATTTTGGG # Right flank : TGTTTTACTGCTGGATAATAGAAGTTTCTTCTCATTGAATAAAGATTTAATCACTTTATATTTATCTTAATTCTGGGATAGTTTAATTATTATTCTCTAGTTGTAATTTGTGTTTCATGATTTTAAAATTTTCAATTCCAATTTTATCTCGTCTAATTGAGTTAACTTACCTTTTTGATTTTCTAATCAATCCATTTTTCTTTATATTTAAGAATCCATATTCTAATTTTATTGTATAGAACAAAATGTTTTTCTGCTATTAAATTAAACTCTTTAGAAAAATGTAATTCAACTGTTTTGATTTTTTATTCTAATGATACCTTAATTTTGGACATAATAAAACTCTACTAGAGTTAGATAGTTTTACATATTTTAACTGTCTCTTAAAGGGATATAGTTCAAATAAGAGTGATTTTTCTTTGACTTTTTCAATAATAGAGTTATATTCTATAAATTTATGAAATGTCTTAATTCCTTCATTACAATAATCTGGAGATTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 31098-31783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGMN010000003.1 Clostridioides sp. ES-S-0108-01 CD-ESS00010801gDNAQiagen-xx-EN-USA-2019-093-JS_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 31098 29 100.0 37 ............................. TTTTTAATCTTACGTCACCTTTTATTCTTCTTATTAA 31164 29 100.0 36 ............................. TAAATTATTTTACAATAATGATGATACAATTCTTTA 31229 29 100.0 36 ............................. TTAGATCATGCTTATCGTATGGCTTATTTTGTTCAA 31294 29 100.0 37 ............................. TGTAAATCCTCTGGAAATGCTTCTCTTAAAGCTGTAA 31360 29 100.0 37 ............................. ATAGCTAAAGAAAATTCACTGAAAGAACTTCCAATAA 31426 29 100.0 37 ............................. TTGTTTAGGATAATATTCTTTTATAAGAAGTTCTACA 31492 29 100.0 37 ............................. AAAAATGAAGCAAGTTATTGTGATTATACAGGATTCC 31558 29 100.0 37 ............................. AAAGGTGGTCTGATTATGATATAGAAGAAATCTACAG 31624 29 100.0 37 ............................. ATTGGATATTGTACAATAAAAGGTGAAAGATATGCAC 31690 29 96.6 37 .......................A..... AAAGTTTATAGGAGTGTCAACACCAGTAGTATCTAAA 31756 28 79.3 0 ......C........T..-.A..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 97.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : ATCCATTTAATCTAAAATGTGAGAATATTTATTTATATCTATTTTTAATAACTGTATGTCCTAATCTTTCAGAAATTATTTTTATGTTGGTTACAGTTAGAAGAAGTAAGCTTGCATTTGCATGTCTTAATTCATGTATCTTTATACATAGAAGGTTATTAGTTTCTAATAGTTTTTTAAAGAATATATTTATTTTATTAAATTTGCTTGTTTAAGTTAACTCATTTTAATATAAATAATTATTTTTTTGTAAATTAAAGTGTATTTATTTTTATTAAATTATAAATTTACATAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAGAAACTTTGCAGTGTTCGATTTTTTTGGAAAATTGTTTGTAGTTATTGAAATTACTGTTTTATAGAGGTTTTTTATAAAGTATCAAAAAACACTACTGGTCGCTCACTGCAATTTTAAGAGAATTATGTGATTTAAGGTATTGAAAATGCTCAATTTATTTTGGG # Right flank : ATCGAAACCACTAAATAACACTTACTCAAATAGTAGGTGTTTTTTTATACAAAAACTTAAGAAAGGAGAGTAATAATATGGCAATAATACAAACAGCTATTCGAATTTTCGATGGAATTAAATTTTAAATATAAATATACCTTAGGAATTGTTAATAGTAGTGAAAATACCTACTAAAGTGAAGATACTTATCTTTATGCTAATACAAAGAAGCTTAAAGCTTTTATTAGAATTAAAGAATCTAAAAGCATTATAAATAGTAAAACTTCTAATTTAGATACGAAGCTAGAGGAATTAAATAATGAACTGTTAAATGCTATATAAAATATCTAAAAGAATTAAAAAAGAGTGCAAAAGCACTCCAATTGTGAGAAATATATACATAAAATCATTATTACAACAATGAAAAATGTACATATTAAGGGACATTTTGTATTTTTTTATGATAACACTTAATTTAAAATAAATGTTTATCATAGCAATAAAAAAGAAAAAGGGAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17944-18170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGMN010000004.1 Clostridioides sp. ES-S-0108-01 CD-ESS00010801gDNAQiagen-xx-EN-USA-2019-093-JS_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 17944 29 100.0 37 ............................. ACAACTGCTCAAACTCGCTTAGGTCTAGTTTTATCAA 18010 29 100.0 37 ............................. GGTGTTATTTTATATTTAGTTGGAAATGATAATGAGA 18076 29 100.0 37 ............................. TTTAAATATAATCTTCTTGTTGCTTCTATATCTACTA 18142 29 93.1 0 .....................G.....T. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 98.3 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : AGATGAAGTACACGTAGCATATGGATTCCACGATTTAAAGGATGCAGAGCTACAAAATAGTTATGGAGTTATGAGAGAAGCTCAATTATAATATATAATGCTTACATCAGACAAATATGTAAGCATTATATATTATAATCATTTCAGCAAGGAACATAAAATTGAAAAACTAAGGGTGATTTTATCATATAAACGCCAAAAGAAATAACTTTTAAATTATATTCAATTAAAGAATTAACCTTTTACAAAGTAAATTTTATTTCCTTATTTTTATTATATCATAAATTTATATAGACATTCAAAAATAGTATTTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATTTTTCTTGTAAAGTATGGTTTAACAGTTGAAATATAAGGCATTGAGAGAATATGATAAGTGTTATCAATTGCACTATTGACCGCTCACTGCAAATTTTAGAGAGTTGTATATGTATAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTTTATTATTAAAAGTAACGTATTTATTATCAGCTTTATATATTCTTTTACTATAATAATTTATTTAAAATAGATTTCATATAAGAGTTATAGAGAAGATACTGTATAAATTCTTACTTTTTAGAGAAATAAGTCTAAAAACAACAGAAAGTAAAAAATAAATATATTTTAATGAGTTTTTTAGCAACAGTTTATTTTAAATTGTAGATAAAACTAAAAAGGATTCTCTAGAAAACAAAATCTATCTAATTATACTTACTTACCAATAACATCACTTGATGTAAGCAAGATTCTACCACATTTTCTCCGTATTCTAGTATAAAATCATTTAATTGTGTATCTATAAAATCACAATAATCATATGAACTACCGATATAAGCAGTCAACATATGTGTACATCTATCCATTTTATCTCTAAACATATATTATTATCCCCCTAAAAAACTTCATAAAAACAAAAAGAATACATCTTTTTGGCAACTGGCTGACATAACTCATAA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //