Array 1 3591-3923 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZES01000103.1 Companilactobacillus paralimentarius DSM 13238 = JCM 10415 strain DSM 13238 NODE_148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3591 28 100.0 33 ............................ AGACTGGGTTAAATAGTGAATTGACATACAGTA 3652 28 100.0 33 ............................ TATAGTTTTGTATGCTATCACCTCCCTAAAATC 3713 28 100.0 34 ............................ TGTCAAAGAAGACGTAATCAAGTTTATCAAAGAA 3775 28 100.0 33 ............................ TGGCAGCCATCGTCACTGTCTTGCCCGAACCGG 3836 28 100.0 33 ............................ TACCAAAGAGCCACATGCACCACTGTCCTCTGA 3897 27 82.1 0 ...T..........T...A..-.....T | ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.0 33 GTGCTCCCCATATACATGGGGATGATTC # Left flank : AAATGGATACTGGTAGGTGGATTCCGATAAATGATAGTGGAGCTATGTTGAATAGTGCAGGATTTAGTAAATTAGGAAATAATTCTCTTACTGAATTTATAGGACCAGGAAAATGGTTGATGAATGCAAATAGAGACGGCCTTAAATCAGGTGTCTATTCTGGAAAAATAACGTGGAGCGCTATTGATGGAATTCCTAATAATTAATAAGTGGACTTGAAAATATTATAAAAGCGTATAGGTAAGTGCTATTACTAGTATTGAGAGTCTGGGAAAAATTACAAATAAAAGAAGATTCAGAAATTGCTTTGATTTCTGAATCTTCTTTTTTGTGTACATGAATTTAGAAAGTTTTTGTTAGTTATTGAAAACTTGAAATAGAGTTGCTTACAATAGAAGAGAAAGTTATGCTTTAAGAGATTGATGAACTTACTTTTTCAAGTTAATAAAAATAAGTGGATTTCTAATTTTAAAGTGTTGATATATCAGTCTTTTCTTAGT # Right flank : TTCAAATAAAAAAAGATGCCTATGTCAAAACACTGAATGCTTTGATATGGGCGTCTTTTATTGTGTAATGTGTCGTTGATGGAAAATACCGAAGCCTTTAATTGCGAGACTGGAGATACCGACTGACATGACAGCTAGTAGGAAAGAAATTAAATCATTTAAGGCAAAGTTTCCTAAACAAACTAATCCATCAATAATGAATAGACTGATATATTTATCTACACCGAAGTTTTTATGAATAATCATTGGGGGAACTGTTGTCCCACCACTAGACATGTTGAGAGTATAAAGAATAGCTAAACCAATTCCAAAAATGATACTTCCTACTATAATAGAGATTACTCGATTATTAGGAATTAAATTGTAAACCGGTGTGATATATAGCAAGAGGGGAAGCATGAAACTTCCAATTGCTAATTTAATGGTGGTTTGTCGATCTAAATGTATGTAAGCCAGTACTAACATCACAATATTTATGGAAAGAACCGAGATGAATGTTG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATATACATGGGGATGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 16014-16772 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZES01000155.1 Companilactobacillus paralimentarius DSM 13238 = JCM 10415 strain DSM 13238 NODE_321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16014 28 100.0 33 ............................ TGTCAAGGTTAATATTCGCTATTTTTGTCATTT 16075 28 100.0 33 ............................ CATTAGCCGAGGATACTCCTGTTAGTACGGAAG 16136 28 100.0 33 ............................ CTTTTGTGCTTGGATATCATCTACTTCATTATT 16197 28 100.0 33 ............................ CGTGTCCAGCTTGTATTTGTTTTTTCATCATGG 16258 28 100.0 33 ............................ CTAAGTCGCAGTTACCATTCACAACGTTGTAAT 16319 28 100.0 33 ............................ CAAACTCGTTCAATACTTTCATCCCCTTTATAA 16380 28 100.0 33 ............................ TGTGTGGACCTTGGTTTAAATAGGTGGTCCTTC 16441 28 100.0 33 ............................ TACAAGCATGAACATGTTTATAAATTAGTGAAA 16502 28 100.0 33 ............................ TAATGACGAACGGTTAGGCGATTGGGAACCCGA 16563 28 100.0 33 ............................ TGTGTGGACCTTGGTTTAAATAGGTGGTCCTTC 16624 28 100.0 33 ............................ CGTTGTGAAGCAATTCCTCCACACCTGTTACGC 16685 28 100.0 33 ............................ TGGTTCGGCCAAGCATCCACGGCCTAAGTATAA 16746 27 75.0 0 ..GT.......A..C..-......G..T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.1 33 GTACTCCCCATGTATATGGGGATGATTC # Left flank : TATTTGGTTCCTTAGGGGATAGGGATACTTTCAAAAAGTGTTCATTGATGATCAACTACGCAAGTGTGAGACGAGAGCAGCAGCAATTATACAGCCACGGTGGTCGTTTATACTTGATACAAGCACAGGCTGAAACGGTTGAGGATGCTCAAACAAAAGTTTATCAAGAACTTGAAAAAATGGATCAAACAAATATTTTTTATCGACGAGATATTGGTAAGAACTCCATTTAGTTCAAAAAGGTAGAAGTAAGATTTCGTTTGAAATATTACTTCTACCTTTTTATTTGAATCGATATCTTAGAATTTTGAGTTTTTGAAAAATTTATAGACATAGATATTTAGAGTATTTTTTATTGGTCATTGAAACTATTGAAAATAGCGTTGCATAGAACGAAAAAGAAAGTTATTCTTTAAGAAATTGGTAATCTTATTGGACAAGTTAATAAAAATAAGTGGTTTTCTAATTTTAAAATGTTGATCTAACGGTCTTTTCTTAGT # Right flank : TTAATTAGAGCCAAGAGCTCTTTTTTTATCATAATTTTTTCAGAAGTGAAATTGTACCGTAAATAGATTTAGTCATGAGCTAATTTGTAATGAGGTTAGATATTAGAAAGTAAATTTTCATTTCTTACAAGTCTAACTATATTAATAGTGGCATAATAAAGATAACGATTACATTGCCGTTTGCGTAGATAAATTTGAAAGATAATCTCTCTAAAAAGGGGAAATATTAAATGTCAGTAAAATTAACGAGTAGAGAAACTAGTTTATGGGCAAAAAAACATGTAGATGATGGGGAAATGTTGTGGCTTCCATTAGTTGCCCACTTAGTAGATTGCAGTCATGTGATGAATTGGCTTTTTTATCATTGGTTAAATGCCGGTCAAAGAGAATTGTTAACTCAGTCGGTTTCTGAAGAAGACATGCAAAAGCTAATTAAATTTTTGGGATTCTTTCATGATATTGGGAAAGCCACACCGGCTTTTCAAACAAAAAAATCTTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCATGTATATGGGGATGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 27115-26477 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZES01000155.1 Companilactobacillus paralimentarius DSM 13238 = JCM 10415 strain DSM 13238 NODE_321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27114 28 100.0 33 ............................ TCATTTGTTGCAACTTGGAAAAATACTCTGTCA 27053 28 100.0 33 ............................ TCACTAATGCAAAGCCAGATGTATCTAGTTTTG 26992 28 100.0 33 ............................ TCATTAAGTAAGCAATTACATCATTGTCCATTA 26931 28 100.0 33 ............................ TAGGTTATCAATTGTTACAGAATGAAAATTACA 26870 28 100.0 33 ............................ ATACCGTATTGCTGAGCCTTAGCACGGGCAAAG 26809 28 96.4 33 ....................A....... AAAGATGACCAACTTGCTGACCGAATACTAAAA 26748 28 100.0 33 ............................ TAGTGCTGATAAGTCTCTTTCAAAAATTCAGAA 26687 28 100.0 33 ............................ CAGCGCCTATTGTGGCTGGTTTTGGTTATGCCG 26626 28 100.0 33 ............................ TCTTTCAATCTTGCATCATTTTCAGGCCAATTG 26565 28 100.0 33 ............................ CAGCGCCTATTGTGGCTGGTTTTGGTTATGCCG 26504 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 33 GAATCATCCCCATGTATATGGGGAGCAC # Left flank : CTTCTTTGGTGACTTGTCCGAAAAATTCGATTAATTGTTGCAATCTACCTTAAATATAAAATAATTGGTTTCCTATTTCATACACTAACCATTAAATTATAACCATATTTAAT # Right flank : ACTTAAAAAAAGCCGTTACATAGGCATTTTCAAATTACAAGGTTGCCGTTTTTTATTAACTTCTCTGCTAAAGACAACGTAGCTTGAGCATCAGATAATGCATGATGTGGATCTAAATTCTCTATCTGATATGCCTCCAAGACAGTTGTTAAACGATAGTTATCTAAAAACTCCTGAGTTGTTTTTACTATTGGCATAAGATCGTGGGTAGAGTTAGTAAATTCGGTTTTTCCAACTTTCCGCAATGCTTCCGTTAAAAACCCTTCATCAAATTCAAGATTATAACCGATGATGACTGAATCCTTAACAAAATCAGACAATGCCTCTAATCCTAATGAAAGCTCAACACCCTGTTTTTGCAACTGTTCTGAAGTGATTCCGGTAAGTTCAGTAATTTTGGATGGTACTAAATCCACACTTCGAATTAATTTTTCAAATTGCAGTAATTGTCCGTCGGGCATTATCTTGGCTGCTCCAATTGAAATAATTTCTGCTTTAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATCCCCATGTATATGGGGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //