Array 1 43441-44140 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRX01000036.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3964 NODE_36_length_59075_cov_4.55329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43441 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 43502 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 43563 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 43624 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 43686 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 43747 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 43808 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 43869 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 43930 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 43991 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 44052 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 44113 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1070-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRX01000061.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3964 NODE_61_length_1086_cov_2.14342, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1069 29 100.0 32 ............................. GCGGATCTGTTTTGAGGTGTTCTTCAACTGTG 1008 29 100.0 32 ............................. ACTATTCGGTCAAAACAGCCTCCATTCTCAGC 947 29 100.0 32 ............................. CCAGCGCAAGCGGGAAACAATCATCGGGCAAG 886 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 825 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 764 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 703 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 642 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 581 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 520 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 459 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 398 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 337 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 276 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 215 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 154 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 93 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAATATATAGTTTTAG # Right flank : GTGTGAACGTCGGATAAATACCGATTCCGCCTGCTCCTGCTGTTCGGCGTTCGCCTGTGGAGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //