Array 1 171240-172854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOM01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171240 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171301 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171362 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171423 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171484 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171545 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171606 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171667 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171728 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171789 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171850 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171911 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171972 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172033 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172094 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172155 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172216 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172277 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172338 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172400 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172461 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172522 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172583 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172644 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172705 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172766 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172827 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189362-191892 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOM01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189362 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189423 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189484 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189545 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189606 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189667 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189728 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189789 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189850 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189911 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189972 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190033 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190094 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190155 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190216 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190277 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190338 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190399 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190460 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190521 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190582 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190643 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190704 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190765 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190826 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190887 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190948 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191009 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191070 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191131 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191192 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191253 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191314 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191375 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191436 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191497 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191558 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191619 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191680 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191741 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191802 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191863 29 93.1 0 A...........T................ | A [191889] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //