Array 1 4425-2880 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJETK010000004.1 Staphylococcus pseudintermedius isolate 18S03470-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4424 36 100.0 30 .................................... TTGGACACCTAAAACTTTACAATAGTATGC 4358 36 100.0 29 .................................... AATAACGCAGGTACTAAACCAGAGATTAT 4293 36 100.0 29 .................................... TATAAATTTGAATATATGAGCAAATTAGC 4228 36 100.0 30 .................................... ATCTTCACTTGTCATAACGTAAAGGTTTAC 4162 36 100.0 30 .................................... TTGATATCAGAAATCAGAACATTCAAAAAA 4096 36 100.0 30 .................................... TGAAAAAGTCATAGCATTATAATCAAAATT 4030 36 100.0 29 .................................... TTAAATTCTGGTGATATTATTACCTACGA 3965 36 100.0 29 .................................... GCTGCAGGACCTTCCATTACATTTCCTTG 3900 36 100.0 30 .................................... AAAAATGCTTGGTCTTTACTGATTGAAGTT 3834 36 100.0 30 .................................... AGTGTTACTTATGAAGCTTTCACGGAATCT 3768 36 100.0 30 .................................... TCACTTATCTGATGCTAAAGGTGAGTTTGT 3702 36 100.0 29 .................................... AACTGTCAATAATACCCCCTACAAGATGT 3637 36 100.0 30 .................................... ACGATGAATAACCTCTTGTACACCACCGCC 3571 36 100.0 30 .................................... GGCGCCTTAACGTTCAATTAATATCAATAA 3505 36 100.0 29 .................................... TGTACATTTAAACGATTTATTCGGTCAAG 3440 36 100.0 29 .................................... TTGTGAAGGAAAAATCGACTTCACGTTGG 3375 36 100.0 29 .................................... AGACATACTAACTAAAGTGAAAGAGGTGT 3310 36 100.0 29 .................................... AGAAGCTATATTCAAGCAAATTATTGATA 3245 36 100.0 29 .................................... TGATTTTTGGTTAGGTCAACTTATGACAA 3180 36 100.0 30 .................................... AAAGAATACTATAAAGAGCAAAGTAAATAC 3114 36 100.0 30 .................................... AATTATCGATGTCATTCAAAATGGTGGATA 3048 36 100.0 30 .................................... GTAAACACTGTTTATCATGTTGAAGTGGCC 2982 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 2916 35 88.9 0 ..........................-.CA.C.... | CT [2883] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.4 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTTTTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAATATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //