Array 1 28516-24881 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOJN01000231.1 Lacticaseibacillus casei strain B900021 corpoica-T_BGMINA:B90021_c00335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 28515 32 100.0 35 ................................ CCATCAAATCACCCAATTTGATGCTGTCAAAGTCT 28448 32 100.0 36 ................................ GTTCCAGCCAAAACGCTTGGAAAGCGCAAGAAGCGG 28380 32 100.0 33 ................................ AACAATTGCTTGCTCCGTTCGGCTAACGTACCC 28315 32 100.0 36 ................................ TACAAGTGGCGAGACAACATGCCAGATTCGCTTGAG 28247 32 100.0 35 ................................ AAAGACTACAAAGACAACCTGATTGCTGATGTGAA 28180 32 100.0 35 ................................ CAGTAGTGGCAGTCCCTGCATAAAGCCTGAAGATT 28113 32 100.0 33 ................................ TCAAAGCTGACACCGACTACACTTTTGGGACAG 28048 32 100.0 34 ................................ AAAGCTAGGTAATGGCTTATGTTTTTTCAAGAAA 27982 32 100.0 34 ................................ TCGTCGATACTTGACGCTGAACGAATCCGCCTAG 27916 32 100.0 36 ................................ ATCAAAAGTGCCAACAACCTCGAATCCGTAGTGCTT 27848 32 100.0 35 ................................ ACCACTAATAACAGCCTTGCTTACTAATTCAATAT 27781 32 100.0 34 ................................ TTGATAGTAATTACCAACAGCCTGAGTAACTCCG 27715 32 100.0 34 ................................ AAGATTGAGACGAACTAGCCCGTGATCTGGAAAG 27649 32 100.0 33 ................................ AACGGTCAAGAAGTATCCGTGACAAGCGGAGAA 27584 32 100.0 33 ................................ CATCAAATAAGCAGCATATTCACTTGGCTCGAT 27519 32 100.0 39 ................................ GTCATAGTGATAGTTTCTATTTTGACTAAGAAAAATCTC 27448 32 100.0 36 ................................ GATATGCTATGAATGCCATCATATGATTTGCACCAT 27380 32 100.0 34 ................................ AATGTAGCAATGATATTGATACTGACTTGCTATT 27314 32 100.0 36 ................................ TGGACGAAGGGCTGATAAAGCGAGATCCAACCTTGC 27246 32 100.0 36 ................................ GTGTTAGCTGCTCCTAGACCCTCTGTAATTAGATCC 27178 32 100.0 35 ................................ CTTGTATGGCTTGAATAACGGCGCTCTTGGCTAGG 27111 32 100.0 36 ................................ CGTTGTAGCAACCTATGACGCAGGAGAAACGCTCAA 27043 32 100.0 34 ................................ ATGTCGTACAGACGATCTAGCCGCCATTGGAGCA 26977 32 100.0 32 ................................ TTGTACCGCGACTACTCCCGTGAGAAGATATA 26913 32 100.0 33 ................................ AAGAAGCCGCCAAACAGCTTAATGACGATCAAA 26848 32 100.0 34 ................................ ATGGACGTTCAGTGCCAATACCAACATTCGTACC 26782 32 100.0 34 ................................ AAGACAACAACATCACCTTAGCCAAGCTAGATGA 26716 32 100.0 33 ................................ TAGGAATGATACTCATAGTTATTGGCGCCATTG 26651 32 100.0 34 ................................ CTTACCGCCAAAAAAGTCGTTAATGCTTGCTATT 26585 32 100.0 36 ................................ TTGTCCAGCCAGGTGATGGATGCTCTGGAACGTTCG 26517 32 100.0 36 ................................ AATCAGTTGCGCATTAGCGTTGGCTTCGTTAGATAC 26449 32 100.0 34 ................................ TCACCAAACTAGTAACAAACTTTAACCAAACTTG 26383 32 100.0 36 ................................ GAAGCGCCAAAACTAGAAACGGCCTTGCGGAATGGG 26315 32 100.0 36 ................................ CAGTAAGATATTCGCATGAAAATACTATCAGTATCG 26247 32 100.0 34 ................................ TAACGGTCGTTGCTCGTTTGGTTTGGCGTGACGG 26181 32 100.0 34 ................................ TAACAACCAGCAAAGTAGACCAGTTGGCCGTTTG 26115 32 100.0 35 ................................ AACATCGACATAAGCCGGCAAAACCTGACCAGCAA 26048 32 100.0 34 ................................ AAGATTCATGCTGATGTTGCTTCGGGTACAAATC 25982 32 100.0 34 ................................ CCGATAACGCTGACGATAAAACAGTAACATGGAA 25916 32 100.0 36 ................................ TTACCATTTACATGTAGGTATTACTAAAATGGACTT 25848 32 100.0 34 ................................ CAACACAGACGGGTCAAAACGTGTGCTATTGGTG 25782 32 96.9 34 ........................T....... CATAAAAGACGCGGTTAACTTGTGTATCGGCAAG 25716 32 100.0 36 ................................ ATAGATGGTTTTAGTTTTATAGTTACGCGTTTCCGT 25648 32 100.0 38 ................................ AGGACCTCTTCAAGAGCAAATGAAGAAAAACGGGGCTT 25578 32 100.0 35 ................................ GTGGAATCCAAAGCTGACTAAGGACGTTGAGATCG 25511 32 100.0 34 ................................ TTCTGCCAGTAGACTGAGAATCGCATACCGCTTT 25445 32 100.0 33 ................................ TTTTTTATTGCGGCTAGTCGCTTGTTTAATGCC 25380 32 100.0 35 ................................ TTTTTGTGCAGAATTCAGACGCGACTGAAATAACA 25313 32 100.0 36 ................................ TGGAAAAATAATGAAATGCCTAACCCATTTATGCAA 25245 32 100.0 35 ................................ TTGTTGCCAAAAACATTGTAGTAACGCTTGGCCGG 25178 32 100.0 34 ................................ TAATAAGGGTATTAAGGAATCTACTGAGGAGAAC 25112 32 100.0 34 ................................ TTGAATGTCATTATATGCTTTTACGCCGATGAGA 25046 32 100.0 35 ................................ TTGTTGGCGATAGCCTCAAGACTGTCAGCCACGTT 24979 32 96.9 35 ...............G................ GAAAAGACTAGCACGGCGCTCGGTAAGGTTAATGC 24912 32 84.4 0 ....T......T..........T.T.....T. | ========== ====== ====== ====== ================================ ======================================= ================== 55 32 99.6 35 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : CGACTATTAAAACAGGCTCAACAGTACGTCGTTCAAGTATTTGGTGATCAGCGTACTAGCGAAAACTTGGTTAAAAACGGTGTTGCACGTTTCGATGAGCATACGGGATTATGGATAGCCAGAGAAAGTCAATATGACGAAGATTTTGGATTGGATACAACGGACAAGGCCATGAACTATTTTGTATAATTAACAATCTTAAGTTGAAATTTAGATAACTTGATTTGTTGTCGAAGTTTCAAGGACAGGGTAATCTGAAGTGAGCGGTATTCAGTTGAATTGAAAACTGCTTTCTGGTGACAAGATGATTTCTAGCATCACTTTTTGTAATGCCTTCCCTTGGTGCGAATGGTGGGTAAACATATAAACCCGGGGAGATTCGCACCAGATTTATATCTGAAAGTACCGTGTTGACGTTTTATCTAGACTTTTTGATGTGTATAGTTAAGCACCAGCCGCAAGATGTTGTGATCTTTAGGCTTTTTGTGCAATATCTTGCG # Right flank : TCTTATGATCTTAAGGTTGGTGGAGCACAATTTTTAGTCCACATGGCTACATGAATTACAACTCGCGACTGTCTGAACCAAAACAACGTTGCAGTTAGGCGTTTTGATAACTACCTGCAGCGTAGTCCTCGTAATTGAGTGCCTCGAGAATAACAACAATACTCAATAACGGTGATTTTAAAAATGGCCTCTTCCAATAACAGGGAAAACGCCATTTTATTATATTGAACATTGAATTACATATCGACCATGATTAACATCTGTAAATCAACAATCTCACAGGAAAATACGCCGTTCATTCGTGCACTTTGACAGTTTGATGATCTTGAAAATATGCGTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAGCCATCGTTTGCCTCAACGACTAAAGTACGATTATCTGCTGTAACACCAATATCAATGGAACACGTGTTTGGTGCTTCTTTCCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.30,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 37432-39458 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOJN01000231.1 Lacticaseibacillus casei strain B900021 corpoica-T_BGMINA:B90021_c00335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 37432 32 100.0 36 ................................ TACAAGTGGCGAGACAACATGCCAGATTCGCTTGAG 37500 32 100.0 35 ................................ ATGGAACTCCCATTAGAGCAAATGAGGCTACTGAC 37567 32 100.0 36 ................................ AAGGTATCATGTACGACCCTTATCAATTTGGACCAA 37635 32 100.0 34 ................................ TTCAATATCAACAAAACCACCGGAATTCCTGTTA 37701 32 100.0 34 ................................ TACAAAAGGAGGCTATTTAAATGAAAGCTGAGAT 37767 32 100.0 33 ................................ TGGGGAGTAGACGCCTTTTTGTGGCCAAAATAA 37832 32 100.0 33 ................................ CCTTGGACACTTATTAAGCATGGGGTGGGGTAC 37897 32 100.0 33 ................................ CTTTCTTGATGCTCTTATAGTAACTCATTAAAG 37962 32 100.0 33 ................................ ACCAGAGAAAGCCTTGTTGATTGGGTTGCTGAC 38027 32 100.0 34 ................................ TTCATGGGATTGATGTAGCATCATATCAGCAGGG 38093 32 100.0 35 ................................ ACATAGCTACAACATCAACTACGGTACTCGAAATG 38160 32 100.0 34 ................................ CTGTTAGCAGAACCCACATTCCGAATGCGATAAG 38226 32 100.0 36 ................................ TTTTTCGGACATATTAGTGGCCAATCCAGGCTTTAT 38294 32 100.0 35 ................................ CTTTCTGACGTCTATCACTCCGCCTTTGGTATTCT 38361 32 100.0 34 ................................ CAACGGTTCCGGCTGATATTGGCGACAAACTAGA 38427 32 100.0 34 ................................ TCGTATTTGACACCCAATTTATCCATTTCGTTTG 38493 32 100.0 33 ................................ TTAAAGCTGCCGGAAGTGTTAGGGGAAGAGCAA 38558 32 100.0 35 ................................ TAGGCAGTAATTGACGAGCTTGCGCAAATCCTTTA 38625 32 100.0 33 ................................ CGGCAGGCATTGACCATATATTTGGCGCACCTC 38690 32 100.0 35 ................................ TCAAGATATGGGCTTGAATATTGATATGAGTGGTC 38757 32 100.0 34 ................................ TCCGAAGATAACCATTTCTGGTACATATCCTCGT 38823 32 100.0 34 ................................ CCCGTTAGGGTAATGGATATGCAAACGCATAAGC 38889 32 100.0 36 ................................ AATAACAGCATTCAGAATCGCGTTTGAATCTGCACC 38957 32 100.0 35 ................................ AATCTCACTTACCTCCACTCTCGGATTGACTTTGT 39024 32 100.0 35 ................................ ATAGTCGCCGGCGCGGAACCGATTATTACTAAACT 39091 32 96.9 34 .........C...................... ACATCTTCTTAATGAGTTGATTGAATTTTGCTTT 39157 32 100.0 34 ................................ TCCCGGCCTTAGCACCGCCGTGTAATAACCACGA 39223 32 96.9 37 ......C......................... CAGGAACTTGTGCTTAACGTTGTCGTAAATGGATCGC 39292 32 100.0 36 ................................ ACTCCAAAATACCTGTCTGGTCTCGTTGGTGTCTGC 39360 32 100.0 35 ................................ CGCAACTAAAGGCACATCTGCGGATGGGCAAGGAG 39427 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 31 32 99.8 35 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : TATGTAAGTACATTGTCTTTCCAGGCTTGTTCAATATGAATAAGTGCCCATTGACGTTTGCAAAAAACGAAATGCTGAATGCCGGATATTAAAAGCCAATCCTCTTCTGAATAATACAATTGAGTCACCTCCAAAGCAGCTATTAAATTCGCCTATGCTCATTATTTCACCTATCGTCTTTGATTACCAGCATAAGAAGTCAAAAATATAGCGCTTACAAGTTTGTGGCCAAAAGCTTTTTCAAAATTTAGTTGATCATATCAGGCAGGCATTGAAGATACGTTAACGTACTATGGTATATTGTTATTGAAGAACAACATGTTTTCGACAATGAAGGTCTGAGTGCGAATGTAGGGCACACATGAAATCGCCGGTACATTCGCACTCCTGTTGTTAAGTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTGTTATGTGTTAGGAAACACATTATGTTGCG # Right flank : TAGGATTGATTATAGCGGCAATTAAGTCTCGTAATCCTCATAATTACATGAGCTAAAATACGCCCTTTGAAGAAGCATATGGGGGTTAAATCATTCCAATTAAATGGGATGCGCAAAGCAAAATTATTGCTTGAAGCCTGCACTTTCTCCGCAAAAAAACCAGCATGAAACCCGACTGGAAGTCTGGCACATGCTGGCTTATTTGCTTGGAATGTCTGCTGAATTTACCTACAAATCCTTTCGCCATAAAGCTAAAACCGACAAGATAATAGCAGTCATCAAAGTTGTCTACAGCTCATATCGTTAATAGTTCATACAGTTAATTTCTTTAGATATCTTGCGATTTTTAATATAGTGTTAGTCTTTTTTCACCCATCCGTGACACTATGCGGCTTGCCCTCAACCCTGAGTACCTCTTCAACACTAGGCCGCTCACGCATTGATTCGTCAAACGCCCGTAGCTTTTGCAACCCATCAAACGAAAAGCCAAGCCGTCGCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //