Array 1 163284-161595 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCNR01000007.1 Ligilactobacillus animalis strain P38 Contig_007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 163283 36 100.0 30 .................................... ACCGACGATTGTGGCTAAGCTCTCACCTTT 163217 36 100.0 30 .................................... GCGCAAGCACAATAACGGTAACTAGATAGC 163151 36 100.0 30 .................................... ACCTCAAAGTGCATATGTTCAAATCGGTAA 163085 36 100.0 30 .................................... TAAGCGTCTGTTTCTTGTAACGCCTTGACT 163019 36 100.0 30 .................................... TTCCCTTTGCCTTCGATAACTAACCCAATA 162953 36 100.0 30 .................................... CGAGAGAATTTCAGCTACAATTTTCTGGAA 162887 36 100.0 31 .................................... GACCACCATTAGCCATCATTCGATGACCACG 162820 36 100.0 30 .................................... ACCTAAAGTTGACAGTAGCGACGCACAAAA 162754 36 100.0 30 .................................... TACTGGCACGACAGACATTAAGGCAACTGT 162688 36 100.0 30 .................................... CAAAGGAGCTATCGCGCTGTTTGTGTTGAT 162622 36 100.0 30 .................................... AGTTATAACCCACCAAGAAACCCATATGAT 162556 36 100.0 30 .................................... ATATTGCCCAAGCGTAATGCCTATATCGTA 162490 36 100.0 30 .................................... AAATTTACAAGATGCAAAGGGAAATAAGGT 162424 36 100.0 30 .................................... AATGGTCAATGATGCTGTTGATGGTTTAGC 162358 36 100.0 30 .................................... ATGTCTTATGTCAATCAGAAGGCTGATCAA 162292 36 100.0 30 .................................... CAAGTATGCTTCGTTAGATGTCAAAGTGAG 162226 36 100.0 30 .................................... CGTATTCATCGATGATTTCTTTTACGTCAT 162160 36 100.0 31 .................................... AAACGTAACAGCAAATAGTGTTACTTTGAAT 162093 36 100.0 30 .................................... CTTCCACAACGACATTAAAACCAAGCGAGA 162027 36 100.0 30 .................................... TTAAATCTTGGATCATGAGCAACATCAGCA 161961 36 100.0 30 .................................... GTTAAAGACGCTTTCGTAAAGGGGGCACAG 161895 36 100.0 30 .................................... TTGCGTTGTTCATGCTCGCACCGTTTACGA 161829 36 100.0 30 .................................... ATCCAGATCTTGGACCACGTTTATTAGACG 161763 36 100.0 30 .................................... AGCATTTATCCCCACAACATCAACTAACTC 161697 36 100.0 31 .................................... CATTGTTAGTCTAATGGCTAAAGGCCTATGT 161630 36 80.6 0 ........................AA...TT.GT.T | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.3 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TGCGGATCTGGAAAGACAATTTGGTGAAAAAGAGGAAGTTAAAGCCAGACTTGAGTTATTAGCAGTGGAGATAGCAAATATTATTTCGAGTGAATGTTTAGAAAATGAGTTAGATCTTGAGTATGATGAGATCACACTGCTAGAATTGATAAAGGCGATGGGTGTAAAAATCGAAACGACGATGTCATCGGTTTACGAAAAATGTTATGAGATAGTGCAAATTTTCAAATACTTAAGTAAGAAAAAATTATTAGTTTTCTTAAATGTTGGTGCTTATTTGACAGAAAAACAAATAAGAAGCTTACTTGAGTACATTGAACTGTGCAATTTGAATGTCATATTCCTTGAGCCAAGTAAGTTGTATGACTTACCGCAGTATATTTTAGATAGTGATTATTATTTAGAGTATTTGAATAGCTCTTCGGAGTCATAGAAAGCGAAAATTTTGCTAGAATTAGTAGCGCGATTACGAAACCACTGTGCCATTTTTTGCATTTGAG # Right flank : TTTCCGGTTGAGAATATGTGCAATTGAAAAATATTTTTACAGTATTTCTATTGACGTCAACTTTATAATTTGATATTATATTAGCGTTGTATTTGTGCATGCCACAACTGCAACCGCACGTTTTAAGTTCAAGTGCTCTCTGAGCCACTACATTACGGCGAGTCTAAGTAAAATACAAGGAGGTGCACATTAATGTACGCAATTATTGAAACAGGTGGTAAGCAACTTAAAGTAGAAGCTGGTCAAGCTATCTACGTTGAAAAGTTGGCTGCTGAAGCTGGTGAAAAAGTAACTTTTGATAAAGTTGTTTTAGTAGGCGGCGAAAACACAGTGATCGGTACACCTTTTGTTGAAGGTGCTACTGTTGAAGGTACTGTTGAAAAGCAAGGTCGTGCTAAGAAAGTTGTTACTTTCAAGTACAAGCCTAAGAAGCATCAACACACAAAGCAAGGTCATCGTCAACCATACACAAAGGTTGTTATCGACGCAATCAACGCATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 172730-173294 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCNR01000007.1 Ligilactobacillus animalis strain P38 Contig_007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 172730 36 100.0 30 .................................... AAAATCTACGCCAGACGATCTACAAACATC 172796 36 100.0 30 .................................... GCCAGCCCAGCCAGTGACCCACTCTTCATG 172862 36 100.0 31 .................................... CGAAGGTTTTCTACATGATAGTGTGCAGCCG 172929 36 100.0 30 .................................... ATCAAATCCGGCTTGATAAAGATCATCGTA 172995 36 100.0 30 .................................... CTTATCAAGACATCATAAACCAAACAGTCT 173061 36 100.0 30 .................................... TTCGCATATGCACAAAGAAGATTAACTAAA 173127 36 100.0 30 .................................... TGAGCACTTGCTTTGCCATTACCAATCATT 173193 36 100.0 30 .................................... TGTGGAAGAAGAAGGCGGAGCTAACCCACC 173259 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TATTCGTCTAATTCCATTGTTTTGATCCTGTCAAGTGGCCATTCTTTCAAAAATTCTTTTGCCAACTGCATATTTTGTTTCTTCCATGCCTCTGCTCGTTTTAACAGTGCTGATTTATTTTCAAAATACCAATCCGAAAAGTGTTTTATATCGATTTTTACCATCCTGTCACCCCATCGTTTTTATATAGCATACAATAAGCTTAGTAGCCGATGCACCTAAAACGCATATAAATTTAGACAAAAAAGTTCCATTAGAAAATTTTTCTAATTTCTTAAAAAGCATCTCAATAGTTAGATAGTGACTCTAACAATTAAGATGCTTCATATTAATCTAGTACTGAAAATTTTAGACAGTTATATTTTGGCTTAACGTAGTGTATAATTATAATTGAATTATGTATTACGTTAATGAAAAAACATGGAATCATACAAAACTGAAATCTTGCTAGGATAAGTAGCGCGATTACGAAACCAAAACGACATTTTTTTGCATTTGAG # Right flank : CAAGCGAAGAGATTGGCGAAGAGCGTCAATAGTTTTTTTGCATGACTCCATAAATGAGTTAGTGCACTAGAACATACTGAATTATTTTAGAACTATTATTTAACGGCTTGATTCTTTTAGCAGAATCAAGTTGTTTTTTGTGTAATCACAAAAATAATATGATGGTGTTTTGAAAAATCTTATGTTGTATCCTACAAATAAAAACTAGCATGTTGACCTCTGTAATACTTGATAGACAGCAAAAAAGCGCCTAATCAATAGGCGCTACGTACTTACCTGTTAGCACACTTCCATTTTTCCAATCCTTTAAATACCAGGACAACACTTGCAATCACTAATAAACTAACTAAAATATTAACGACTAAGTTCACTTCAGCAGAAGGCATCAACTTAGCAATAAACAAACTATAAAAATACTGCGTGATAAAAATAGCAACTACAATGGCAATACTCATTTTATCTTTCATGTTCAGGAGCCTCCTTGTGATCACAAAGACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //