Array 1 29034-28706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJEMD010000057.1 Acinetobacter baumannii strain MRSN61 MRSN61_contig00057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29033 28 92.9 32 .......G.........C.......... TCAAGGCGATCCACCTCCCGTCACAGTCATTT 28973 28 85.7 32 .......G...T.C...C.......... TTTGCTAAAAGGATTTATGCTTTAAAATACTT 28913 28 96.4 32 .............C.............. GTTGGCGTACGGATAACGGAAGAAAGCATAAG 28853 28 100.0 32 ............................ AAATAACCACGGTTGTGGTAAGTCACTTTTAC 28793 28 92.9 32 .........A.....T............ GCGTTCAGGTTGAGGAGATGAAGTGATGTGAT 28733 28 75.0 0 ...T.......T........C...AGCG | ========== ====== ====== ====== ============================ ================================ ================== 6 28 90.5 32 GTTCATGACGGCATACGTCATTTAGAAA # Left flank : CATACGCCATTTAGAAATTCTCCAAGTAAAGAATAAAACAATATACCG # Right flank : TTAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAA # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGACGGCATACGTCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCATGACGGCATACGTCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2834-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJEMD010000058.1 Acinetobacter baumannii strain MRSN61 MRSN61_contig00058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2833 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 2773 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 2713 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 2653 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 2593 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 2533 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 2473 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 2413 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 2353 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 2293 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 2233 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 2173 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 2113 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 2053 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 1993 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 1933 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 1873 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 1813 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 1753 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 1693 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 1633 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 1573 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 1513 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 1453 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 1393 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 1333 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 1273 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 1213 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 1153 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 1093 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 1033 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 973 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 913 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 853 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 793 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 733 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 673 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 612 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 552 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 492 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 432 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 372 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 312 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 252 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 192 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 131 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 71 30 93.3 0 ............................AG | ========== ====== ====== ====== ============================== =============================== ================== 47 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GCGGAAATCTTTTCAAGTGCGTAGGGGATAAGTTCATGGCGG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //