Array 1 228208-229577 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUT01000099.1 Salmonella enterica subsp. enterica serovar Albany strain sg_wb25 wb25_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228208 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 228269 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 228330 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 228391 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 228452 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 228513 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 228574 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 228635 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 228696 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 228757 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 228818 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 228879 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 228940 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 229001 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 229062 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 229123 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 229184 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 229245 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 229306 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 229367 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 229428 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 229489 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 229550 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 246135-248667 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUT01000099.1 Salmonella enterica subsp. enterica serovar Albany strain sg_wb25 wb25_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246135 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 246196 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 246257 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 246318 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 246379 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 246440 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 246501 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 246562 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 246623 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 246684 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 246745 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 246806 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 246867 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 246928 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 246989 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 247050 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 247111 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 247172 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 247233 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 247294 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 247355 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 247416 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 247477 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 247538 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 247599 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 247660 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 247721 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 247783 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 247844 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 247905 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 247966 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 248027 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 248088 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 248149 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 248210 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 248272 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 248333 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 248394 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 248455 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 248516 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 248577 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 248638 29 100.0 0 ............................. | A [248665] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //