Array 1 565424-565842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHU010000001.1 Akkermansia muciniphila strain CSUN-33 AmI assembly_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 565424 31 100.0 34 ............................... TTTCTACTGATTTGTTGGTTGGTTTTACTTTAGC 565489 31 100.0 34 ............................... TTGGCATGGTCATCGTAAATGCTCATTGTTTTAT 565554 31 100.0 33 ............................... CACCTCCCATTTCAATCCCTATCGGAATAGTGG 565618 31 100.0 34 ............................... CACTTGCTCAACTCGGATAGGTCATCAACGCAAT 565683 31 100.0 33 ............................... TCATCCCCGTAGTTGATGCCGGGGATGTGGCGG 565747 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 565812 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 7 31 98.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAGGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21975-21335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHU010000006.1 Akkermansia muciniphila strain CSUN-33 AmI assembly_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 21974 33 100.0 34 ................................. CTGAGCAGGGAACATTTCATGACCGGGTTGTACA 21907 33 100.0 34 ................................. CATGCGCTGCTGCCTGGTCAGCACAGCAGACTTA 21840 33 100.0 34 ................................. CACGTGGAACAATTTAAATCCAAAAACCTCCAAA 21773 33 100.0 34 ................................. CGTTTCGCCGGTGGGGTAAATGACCGTGGTATAG 21706 33 100.0 34 ................................. CGCTCCCCCTGCGGAACAGCAGCAAGAAGTTACT 21639 33 100.0 33 ................................. CGTTGGCGTATACCCCCTGCTAAGGAGCCACTG 21573 33 100.0 38 ................................. TTCTTCTTCTTCTTCATCACTGGAAGATTCAATATTCA 21502 33 100.0 35 ................................. TGCTGGATACGCTGGAATACGATGCGCAATCCCCT 21434 33 100.0 34 ................................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 21367 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ====================================== ================== 10 33 99.7 35 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGGCAAGTGGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCTGGTTCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGTAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTTTGTTGAGTAGCAATGTATAAGGTTGGGCGCA # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 32550-30446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHU010000006.1 Akkermansia muciniphila strain CSUN-33 AmI assembly_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 32549 31 100.0 34 ............................... TTTCTCTTGGTTGTTGCGGGGATTTTAGATGTAC 32484 31 100.0 34 ............................... TGATATGAAGTTCTGGTATTTCTTTCATGGCGTG 32419 31 100.0 34 ............................... CGAAACGGTATTTGACGCCCGCCCTGTTGCGGCA 32354 31 100.0 34 ............................... ATCCGGGTGGTAGTCCGCAATGCCGATTGTCCGC 32289 31 100.0 35 ............................... ACGGAATATCCGGGTAGAGTTGCCCCTCACAAAAG 32223 31 100.0 34 ............................... AGGAGAACAGACCTGCAACGGATGTAGGAATGTC 32158 31 100.0 34 ............................... TTTTAGTTTTAGTGTTTCTTTTAGTGTTCCGGGG 32093 31 100.0 34 ............................... TCTATTGTTCAGTGTTGCTTTCGTAGGGTAGCGT 32028 31 100.0 33 ............................... AATCCGCACATCCACAGGAGGCATGCACCAGGC 31964 31 100.0 29 ............................... ATACGTTGCCATAATCAATAAAATGTGTT 31904 31 100.0 33 ............................... TTTTCGCCGCAGGTTTAACGCCGTCAAAAATAT 31840 31 100.0 34 ............................... CTGCCGGATGTAGCCAAGCCAGGACGCCGTGGGG 31775 31 100.0 34 ............................... TTGCACGGAATGCGGTCCGCAGAAAATGGAAGAA 31710 31 100.0 34 ............................... TTGGTCTTTCTGTTGGTTAGGGTTAATAGTTAGG 31645 31 100.0 34 ............................... CACACCTACCTGTACCTTGTAATCCTTGTCTGCC 31580 31 100.0 34 ............................... GCGGAGCACCCCGGCATACATGTCGCAGCCAAGC 31515 31 100.0 34 ............................... GGTGAAAGGGCATAATATCTATAACTGCATGAAG 31450 31 100.0 34 ............................... ACCATGCAGGGGAGGAAGAAACGTTCCGCCAGCT 31385 31 100.0 34 ............................... TCCGTATTCAAGGAGATTGATTGCCCATTCTGGA 31320 31 100.0 34 ............................... TAATAAATAGGGTAGCTGGGGCGGGTTTAGGTTA 31255 31 100.0 35 ............................... ATTGTCATTGCAGGATAATTTGTCCAGCGTTGCAT 31189 31 100.0 34 ............................... GGAATCATCATCCGCGATATGATGATTCTGGAAT 31124 31 100.0 34 ............................... AATCTCTTCGGAGTCGTGGCCGACAATGAAGCGG 31059 31 100.0 34 ............................... CGATATCTGGATCCGCCTTTCGCGGTTCGGAACT 30994 31 100.0 33 ............................... AGTTGTATGACAAAAGGCATATCTTGTTTATTA 30930 31 100.0 34 ............................... TATTTGTTTAGGTTATGCGGGGGATTGTTCCCCC 30865 31 100.0 34 ............................... TGGAAGACGAGGCCGGCCGCCCGGTAGCCTATAC 30800 31 100.0 34 ............................... CCCGCGGATGACATTTTCCGGGGGACGGGGAACG 30735 31 100.0 33 ............................... CGCTCTTGCTCGTGTTAATCGTATCATGGACGC 30671 31 100.0 34 ............................... TCGTCAGCACGTGACGGAATGACCCTTGATTTTC 30606 31 100.0 34 ............................... TCGTCAGGCTATCCGGGCAAGTTATCAGGCTTTG 30541 31 100.0 34 ............................... CCTGAAAAGCGTGGGGAATCTCTGAGGCGCGATT 30476 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 33 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : GTCGTAGACTGAACGACCTAATATCCCTGGAATAAGAAGGAGCTGTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCGTCCTCGGAGACTTCAATGGAGTGGTGGACTTTCGCAGAAGAATATTGACCACTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGTGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGAACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //