Array 1 50209-49543 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTTR01000017.1 Bacillus thuringiensis strain AFS018179 AFS018179_71_E5_Contig17_140411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 50208 32 100.0 34 ................................ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 50142 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 50077 32 90.6 6 ...A......G........A............ TCTGAG Deletion [50040] 50039 32 87.5 35 .GGA...............T............ TCAATACATAAATCCAAAAAACTAACAATCGGGTC 49972 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 49905 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 49840 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 49775 32 81.2 33 ....T....CT.T......T..T......... TCAATAGAAATTGTGGAAGTTTGAAACACAAAA 49709 32 68.8 34 A..AA...C.T......G.TA.......GG.. TTTTGTCATCACATCGTATTTACTGTACATGCTG AGG [49692] 49640 32 87.5 33 C.........T..AT................. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 49575 32 71.9 0 ...TT....C.......CA....AG...G.C. | A [49548] ========== ====== ====== ====== ================================ =================================== ================== 11 32 86.7 31 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAATTGGCCAAATAAACAAAACATACACCGAACACAACAAGGAACAGGTCCTTATTGATATAAAGGCCTTGATTATTCTCCATAAGTATTACTCATTTGGCGAAAAGTTTCGAAAACATGTCAAAATTATGGTCAACGAGTACAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATGAAATTCCTCGTATATTCGCACCTGAATTTTCATAATTTATGAGTGAATTTTAATATTTTTCATACAGATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : GGTAAGATGCTTGATATTAATTTAGTGCCTCTGCTGGAGTAAGTGGCACTGCTTCAATTCATACAGCAACTAGTGTTGAACCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCAGATACGATGGGGATGAAGCATGGTGCTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATAAGCAAGGAGACAGATTCACCAAAGGTGATGCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGATCAGTAACACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAAATTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATGTTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAATGAATTAGATATTTTAAAAGTGGCGATTATTGATGGACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.34, 5:-1.5, 6:0.25, 7:-0.23, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [27-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 54230-53805 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTTR01000017.1 Bacillus thuringiensis strain AFS018179 AFS018179_71_E5_Contig17_140411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 54229 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 54163 32 100.0 34 ................................ GTGACGGATATAGAGACAGGTGAAAAAACAAAAA 54097 32 96.9 33 ...................T............ CTTAAAGAATACTATGAAATTGAAAGAAGTACA GT [54079] 54030 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 53964 32 96.9 30 ....................A........... AGTAGACAGAAGATGAAAGAAGATTTCTTT 53902 32 90.6 33 ...A...............G......C..... CCATTAACAAAAATATAAAAAGCATACGTGCCG 53837 32 78.1 0 ....T....C.......C.....AG...G.C. | A [53810] ========== ====== ====== ====== ================================ ================================== ================== 7 32 92.4 33 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTATACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAAATCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : GGTAATATGCTTGATAGTAATTTAGTGTCTCTGCTGGAGTAAGAAGAACTGCTTCAATTCATACAGCAACTAGTGTTGATTCAATTGACATTACTAGTATGCAGATTATGAAAAGTATAAATTTTGAGCCTGAGAAGGATAAAGGTTCAGATACGATGGGATGAAGCATCGTGTTGATCTTGGAGCTTATATTTTTTACGGAAGTATTCATATGCAATGAGTAAGAAATACAGATTTTACCAAAGGTGATGCGGAAAATATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGTAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTAACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGACC # Questionable array : NO Score: 8.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //