Array 1 5746-9238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNCS010000016.1 Barnesiella intestinihominis strain D31t1_170403_E6 NODE_16_length_17115_cov_44.3966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 5746 47 100.0 30 ............................................... TGGGGTGAGTTAATGTGTGACATCTCGTTT 5823 47 100.0 30 ............................................... TTACCGTAATTGAGGTAATACTCGCAGTCT 5900 47 100.0 30 ............................................... AAGGAGGAATAGAGGTTGAAAGACTTAAAA 5977 47 100.0 30 ............................................... TCTCGTTGAACGAGAACTTATCAGAGCAAA 6054 47 100.0 30 ............................................... GCCTGCACCGTTTTGGAATAAATTAGGATT 6131 47 100.0 30 ............................................... TTATTTGTTTTTTTTTTCTTTTCTTTTTGT 6208 47 100.0 30 ............................................... GTGCCCCGTCCAGTGGCCCAGCTCATGCAG 6285 47 100.0 30 ............................................... TGATCTTCTGATCGCCCGACACAATGGCCT 6362 47 100.0 30 ............................................... TCCCACGGGAACGCCCAAAAGAAAAAGAAT 6439 47 100.0 29 ............................................... GTGCCATAGATGTTCGTATTACGCTGCTA 6515 47 100.0 29 ............................................... TAAGATTCCCATATTGTTCTATTTGTTTA 6591 47 100.0 29 ............................................... TGGCTTTACTTGCTTGTGCTTCTGCTAAT 6667 47 100.0 30 ............................................... AAATGGTATTTTAGCGCTTTTAATCCATTC 6744 47 100.0 29 ............................................... TATAATGCCTGCTGCTGTTTTCCAATTCT 6820 47 100.0 29 ............................................... CATATAAGGAAATTTGACTTTTTTTATAT 6896 47 100.0 30 ............................................... ACGGTTGCGACGTGAGTGTCAAGCGGAATG 6973 47 100.0 30 ............................................... CGTGTTCACAGAATCCCGACAGGGTGACTG 7050 47 100.0 30 ............................................... TACATTAGGCCGATGTTCAGCCCTGAATTT 7127 47 100.0 29 ............................................... ATTGACGTTTGTCATATATTGGATCCATG 7203 47 100.0 30 ............................................... ATGAATTAATACTGAAAAATAGCCCTAACA 7280 47 100.0 30 ............................................... TTGCCATCTCTTATGAAGATTCCTTCTTCT 7357 47 100.0 30 ............................................... CACCTGCAAGCTCGATATTTTCTCCAATAG 7434 47 100.0 29 ............................................... TTATACTGGCAGCCAAACCAGCTTTAAAA 7510 47 100.0 30 ............................................... TATAAGCTGGTAATACTCCATCATCTCTGT 7587 47 100.0 30 ............................................... CGATATGTTTCTTTATCCCAATTATGTTTA 7664 47 100.0 30 ............................................... TATGTTTATGCTTATTTCTATTTGTCCTGT 7741 47 100.0 30 ............................................... AATCGGAAAGGTATCCCCTGGTAATACTAA 7818 47 100.0 30 ............................................... ACTTGATTTTCCGTGTTTGTATAATCCCAA 7895 47 100.0 30 ............................................... GAGCCGCACGCAGGGTCTCCTGTCTTTCCA 7972 47 100.0 30 ............................................... GCTCACGGTCGAGAGGCATTACTGGATAGA 8049 47 100.0 30 ............................................... GCCCGTTCACGCAGACCACCACGTCCACCA 8126 47 100.0 30 ............................................... AGTCAAAAAAACCGAAATACCTGCTCATGG 8203 47 100.0 18 ............................................... CCTCCACTCGTCGACAGC Deletion [8268] 8268 47 85.1 30 CTCC.TGA....................................... ACAGGCTCTTTAATTGTGGTAATGTCGTTG C [8270] 8346 47 100.0 30 ............................................... TTGAAGGGCTGCCGTTGTTTGCGAATTTGC 8423 47 100.0 30 ............................................... CCGCACAGGCAAGTATCCATGCTTGCTTAC 8500 47 100.0 30 ............................................... AATCAAATGTAAAAACAAAAAATTCCGCAA 8577 47 100.0 30 ............................................... TGGTGATTTCAAGCTCACCGAGTTCATGGT 8654 47 100.0 30 ............................................... TTACCGTTGTTCCGGTAGCTCTCAACTGTT 8731 47 100.0 30 ............................................... AACCAGAGGATACAAGATCTTGAAAGAATT 8808 47 100.0 30 ............................................... GCTGACGCCCATTAACCGGAAACATTCTCT 8885 47 100.0 30 ............................................... TTTCAGGTTCTTCACTTGCCTCATGCCACA 8962 47 100.0 30 ............................................... ATGCCGAACGATTCTTTGATTTCTACGAAA 9039 47 100.0 30 ............................................... AGAAATTTATGTATTACTATAAAACAAATA 9116 47 100.0 29 ............................................... TTATAGGAGTTAAAGTACAAACAAATACA 9192 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 46 47 99.7 30 GCTGTATTTAATATGTCAAAGATACAAATTTGAAAGCGAATCACAAC # Left flank : TTATACAAATGTTTTAACGGGGAGTTACGTAAAATCATCTATCCAGAATTATAATTAATATGGATAGATTCAGCGAATATCGTATTATGTGGGTATTGGTATTTTTCGATTTGCCAACAGAGACGAAACGAGAACGTAAATTGTATGCCGACTTCCGTAAGAAACTGTTGCAAGATGGATTTACTATGTTTCAATTTTCCATTTATGTGCGGCATTGTCCTAGTAGGGAGAATGCCGATGTACATATCCGCCGGGTGAAGCTTTCTTTACCGCCGTTTGGAAAAGTAGGTATTCTCTGTGTTACTGATAAACAATTCGGTATGATGGAAATTTTCTATGGGAAGAAAGAGGTAAAGCCACAGGTTCTACCTCAACAGCTCGAACTCTTTTGAAAAACAAAAAGCCGGTTAAAAAACCGGCTTTTTGATAAAATACAGCTTTAATTTTTGATCCTAATTGATTGTGTAATTGTTTGACTATTAAATTGCTATACAAATTGT # Right flank : CCCCTTCTATCCACTCTGTATTCACCCAGTTGCTGTATTTAATATGTCAAAGATACAAATTTGAAAGCGAATCACAACNNNNNNNNNGGCTGTATTTAATATGTCAAAGATACAAATTTGAAAGCGAATCACAACCTGAAAGCGATGATAAGTTCTTAGGCCAAGGCTGTATTTAATATGTCAAAGATACAAATTTGAAAGCGAATCACAACCCCTTCTATCCACTCTGTATTCACCCAGTTGCTGTATTTAATATGTCAAAGATACAAATTTGAAAGCGAATCACAACCTGAAAGCGATGATAAGTTCTTAGGCCAAGGCTGTATTTAATATGTCAAAGATACAAATTTGAAAGCGAATCACAACCGCCGAATTTACGCAAGTTCGCAACGGCATGCTGTATTTAATATGTCAAAGATACAAATTTGAAAGCGAATCACAACATGCGATTCCTCAATTCACGAACTTGTGTGCTGTATTTAATATGTCAAAGATACAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTATTTAATATGTCAAAGATACAAATTTGAAAGCGAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //