Array 1 17711-20831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOIT010000006.1 Phocaeicola vulgatus strain MSK.17.65 NODE_6_length_138609_cov_163.575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 17711 47 97.9 30 ...A........................................... ACTTGCATTCTTGGCTATTATCAGGCTGGT 17788 47 100.0 30 ............................................... CCTCGGGTGTACGCTTAGCACTCGTTACTG 17865 47 100.0 30 ............................................... CGTTGAGGTTCCCGTACCTTCCAAGATTAT 17942 47 100.0 30 ............................................... TTGTTTATCTATCACCTAAACAGCTTGTTC 18019 47 100.0 30 ............................................... TGTCAGCCGGATATATCAAAGGACTTGTGC 18096 47 100.0 29 ............................................... TACAATGAGGATGATGTTTGCCAATGCTG 18172 47 100.0 30 ............................................... GTTTTTCAGGTAAGAGCATATCCCGTGATA 18249 47 100.0 30 ............................................... ACGATAACAAGTGCCAAGCGCTCTATTTCT 18326 47 100.0 30 ............................................... CCTTCAAACTCAAGGCGCTTTGACAGAGAA 18403 47 100.0 30 ............................................... ATTAACGATTTAAAATTATTATGATTATGC 18480 47 100.0 30 ............................................... AGCAGCAGATAAGGCGCCAATTACAAGTTT 18557 47 100.0 30 ............................................... GAGAAGCCTTGTACAACTTAACTTTCTCTT 18634 47 100.0 30 ............................................... AGTTTGCACCAACCCAACCATTTGCAGTAT 18711 47 100.0 30 ............................................... TATAGTTTAAAACGTCCTCTTTAATTGCTT 18788 47 100.0 29 ............................................... CCGTAAAAATAACTAAACTCGAGTATGGG 18864 47 100.0 30 ............................................... GTTTCATTATTTTTCATAAGTCTAAATTTT 18941 47 100.0 30 ............................................... CCGGCGAGAATATATTACACCAAAGTTTTC 19018 47 100.0 30 ............................................... TTATAACGGCACCAGGACGCAAAACATAAT 19095 47 100.0 30 ............................................... GTGACAATGATTATAGAGTTTGGAGAAATC 19172 47 100.0 30 ............................................... GCAATGCGTGTACCTGTATACTTATTCGTA 19249 47 100.0 30 ............................................... TACTAAATTGAACTACTTCTTTCCAACGCT 19326 47 100.0 29 ............................................... AATATGTTCATTATCATAAGTAAGTGTAA 19402 47 100.0 29 ............................................... TGAATTTGTTGGTAATCTTGGTTTAAGTA 19478 47 100.0 30 ............................................... GTAAGGTTTGCAGCTGAAGAAGCTATAGCA 19555 47 100.0 30 ............................................... GCAGGAGCCGTTGCCTTGCGCGCGGGGCGC 19632 47 100.0 30 ............................................... TAAGGCTAATCCTATTCTTACTGATGATGA 19709 47 100.0 30 ............................................... AATTAAGCGAAGCCCCTAGTTGTGTGCGAA 19786 47 100.0 29 ............................................... AGAAAAATCAATTTTGAATGAAAGATTAG 19862 47 100.0 29 ............................................... TGATATTAATTACGGATATGTAGAAGCCT 19938 47 100.0 30 ............................................... AATTTTCACGTATGGCTTCTTTTTCCGCAT 20015 47 100.0 30 ............................................... TCAAATTAAATCAACAATGTCAAACAAATT 20092 47 100.0 30 ............................................... ATCACGAATTTCTCAGCCTGTTTTGAATTA 20169 47 100.0 30 ............................................... AACTTGTCGTAATCCGTTGTCTTCGGGTCA 20246 47 100.0 30 ............................................... TAACTTTCTAAAATGATTTGTAACTTTGTC 20323 47 100.0 30 ............................................... GAGTCGATTACGCTTTATATCGAGCAATGA 20400 47 100.0 30 ............................................... ACTTCCCGGAAACTATCATGTCTCCGATAC 20477 47 100.0 30 ............................................... GTCCAAGCGTTATACACTTGGACTTTCATT 20554 47 100.0 30 ............................................... CAGTCCGTGAAATCATTTTTGACGAAGTAT 20631 47 100.0 30 ............................................... CTGGCGTCTAAAACAGCCTGTAAATCACCC 20708 47 100.0 30 ............................................... TGGTGCTCTTTTAGGAATCCTCTGTACTTT 20785 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 41 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGGTTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CGGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTCTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //