Array 1 100569-97851 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIBA01000029.1 Lactobacillus johnsonii strain UMNLJ50 johnsonii06I9S12130_Average_coverage:_94.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100568 29 100.0 32 ............................. ACGTTGAAAAAGTAAACGCACATCTAATTGTG 100507 29 100.0 32 ............................. AATTTGGCTAAGGCATATTTAACTGCGTATGA 100446 29 100.0 32 ............................. GTTTTGTTGATCGCCCACGATGATTGTTCTAT 100385 29 96.6 32 ............................C TAGATAGATAATTATCCTGATTTACCTTCGTA 100324 29 100.0 32 ............................. ATCATCATTAGATATTTTCATTAAATATTTTG 100263 29 100.0 32 ............................. CAATTCTTTTAAAGAGTTTACTATATCAATGT 100202 29 100.0 32 ............................. GAGCTATTAAAGCAAGGGGTGTTTATTAATGG 100141 29 100.0 32 ............................. TACATATGCACTGCTTAGCCAAATTACTCCAA 100080 29 100.0 32 ............................. GACTCTGATTCAAGTTTTATTCCATATTGAGT 100019 29 100.0 32 ............................. ACGACAAAGTGAAGCTGAAAAATTAAGCCTTA 99958 29 96.6 32 ............................C ATATAAACCTGAAACATGGGCTAAATCCAACC 99897 29 100.0 32 ............................. AAGAAGCAAGTGGCTAAAGCCAAAATAGAACA 99836 29 100.0 33 ............................. GCTCTCTATGAAAATGAATCACGCTTTGCTTCA 99774 29 100.0 32 ............................. GCACGTGAAGTACTTAAGAGCCTACAGAATAA 99713 29 100.0 32 ............................. GAAATAAACGCTATTGTTACACAACTATAAAG 99652 29 100.0 33 ............................. AAATCAATTATTGCGAAGTTGCATTAACTCCCA 99590 29 100.0 32 ............................. AATACTTTAAAAAGTGAAATTTATCAGCGTGG 99529 29 100.0 32 ............................. GATTTTCCTAATCTCAGTCGGAGTAACAGAAG 99468 29 100.0 32 ............................. TATTGAAAAAGAGGAGTAACGAATGAAGTTAG 99407 29 100.0 32 ............................. TAAGCAGTTCATACATTGACATTGTGAACTCG 99346 29 100.0 32 ............................. ACCCCGATCATAAAACATCCCTTTAGGGGTTG 99285 29 100.0 32 ............................. GACTCTGATTCAAGTTTTATTCCATATTGAGT 99224 29 96.6 32 ............................C TCAACTAAGTGGTCTATGACCCTAGAAGAGTT 99163 29 100.0 32 ............................. GTTTCTGGTGCTTTAACTGGTGGGGTAACCAA 99102 29 100.0 33 ............................. TCTATTTCGAATTTAGTTTTGCGTTCTATGGCA 99040 29 96.6 32 ............................C TAGCCCTCTAAGCCATAATTTCTATATTGTCT 98979 29 100.0 32 ............................. AAGAATGTGTTGCCCGGAATTGAATGCGTAGC 98918 29 100.0 32 ............................. ATCATGGATAATCTTGATCTACTCCCTTCAAG 98857 29 100.0 32 ............................. AAGAAAACAGAAACATGCAGCATGCTATATAA 98796 29 100.0 32 ............................. CAGCATTAAAGCAAACGAACTTTTAGCAGCTG 98735 29 100.0 32 ............................. AAGCGACTTACGAAGTTGAATGCTGAAAAAGA 98674 29 100.0 32 ............................. AAAAGAGACGTTGCCTGGCAATACAGTACGTC 98613 29 100.0 32 ............................. ACTCTTTTGAGCATCTTCTAGTTTTTCAACAA 98552 29 100.0 32 ............................. ATCCCAGCGCTGGACCTCTTCCAAGGCGTTAA 98491 29 100.0 32 ............................. AAGTGATTACCAAAATCCGCTTCAAGTTTTTT 98430 29 100.0 33 ............................. AGATCGGGAGTGTTTTTATTATGCAAAAATATA 98368 29 100.0 32 ............................. ATTCATGCAAGGCTGTGAATACAATTCGTTCA 98307 29 100.0 32 ............................. ATCCCTCCTTAAAATTTTCAATTGCATTTTGA 98246 29 100.0 33 ............................. ACTATGCTCTGACTCAACCATGATTTTCACCAG 98184 29 96.6 32 ............................C TTGTGCCTGATTTAGATCTTGGAGACATGACT 98123 29 100.0 32 ............................. TAAAACATCTTTTCTGAAATTTAAAAGTTCTA 98062 29 96.6 32 ............................C AAGAATAGTATTTGGGAACAATGGAATAATGA 98001 29 96.6 32 ............................C GATTAGTAGCAAGTTTTTGAGTAAGGTCAGCC 97940 29 100.0 32 ............................. ATACCTTGTCATACAGTATGTTTGCGTTTTAT 97879 29 89.7 0 .....................C..C.T.. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.2 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGATGTAAGTGAATTAACAGGTTTGAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTAAAAGACTTTCTTGGAGATCGAATTTTATTAGGTTACAATTTAACATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAAGATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCAGATTTTGATGCAAAATGTACGTATCAATTGGCCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATGTATTTGGACGATTGCATCTTTTTAAAATGCTGCTATCATAGGATTCTTTTAGT # Right flank : GATGCCCCCCAAGTATGAAGATTTTGCAGCGCCTTGGTGTTGGCAAAATTACTAACTCGTATTATCCAGTAAATAAAAAATGCCACATCATTCAAAACATACTATATCTATACAATCCTATGTTAATCAGTTGAATGACTTGATAGTTCATATTAGTTGATTTATATAAAAAATATCAAGAGAGAAAAAAATATGACACCATCAATTGACTAAAGGCCAATAGGATTTGCTACAATAAATGAAGGGACAAGTGAACGTAGTTTATTAGAAAGAAGAACAATGGCACTATGCTAAAAAAGCGACTCACGAGTCTACTATGAAAGTAGGAGATAGTTAGGTGGACGCGCATAGATGTCAGATAGGTGTGGGTGCAAATCTCGCCTTGCTTATCTTAAAGAAAACGATACTCAATTGAGTATCGTTTTTATTTTGGTATTTTTCCTTAATATGGATGTAGGACTTCTAATAAAGATAATTCAAATTATCATCCCATAACTAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8061-9679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIBA01000053.1 Lactobacillus johnsonii strain UMNLJ50 johnsonii06I9S12159_Average_coverage:_67.65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 8061 28 100.0 33 ............................ TTAACTCAAACACAAATCATTGAAATTGAATTT 8122 28 100.0 34 ............................ TAAGAGCTAAAGCGGTAAAGGAAGCTGTTGCTAA 8184 28 100.0 33 ............................ TGGTAAAAAAGGCTTGCAAGTTGTTAACTTATT 8245 28 100.0 34 ............................ TTGCTACTTGTGCTGCATTCTTTAATTTTCTTGA 8307 28 100.0 33 ............................ TTTTGTGCTTGGTTAAATTTTTTGCCACATTAG 8368 28 100.0 34 ............................ TGTGTAAATAATATCCTTATCAGGATTTTTTATA 8430 28 100.0 33 ............................ CAAAAAAAGCCACTCCAGAGAACTTAATCTCCA 8491 28 100.0 35 ............................ TGAATGGCTTTACAAAAAAAGAACAGGAGAATATT 8554 28 100.0 33 ............................ GCTACTAAAATTGCAACTGCAGTTCAAACCGCG 8615 28 100.0 33 ............................ TTACAGTTAACGATCAAGAAGGAAAAGAAGTCT 8676 28 100.0 33 ............................ TATGATACTGTTCCATATTGGCAAGGTTCAGGT 8737 28 100.0 33 ............................ TAACACAATAGTTATATACACGATTTTTATTTT 8798 28 100.0 33 ............................ CAACGATTTTTATCACTCACAAGCATGGAGAAC 8859 28 100.0 33 ............................ TTTCATTGCGGGCGCGAAATAGCAGCGGCTTTA 8920 28 100.0 33 ............................ TTGCTACTTGTGCTGCATTTTTTAATTTTTTTG 8981 28 100.0 34 ............................ TATCTTTAATAGTGAACGGTTTCAATGGCCCGTA 9043 28 100.0 33 ............................ CCAATCGAGAGAAACTTAGAAGATTAGGAATTT 9104 28 100.0 33 ............................ TAATCCAAGTATGCAAGGTGATTGGGACTTAGA 9165 28 100.0 33 ............................ CAAACTTATTAAGACTTTAAAGGAGTACTAAAA 9226 28 100.0 33 ............................ TATTAGCCTTCACTTGTGCGTAATGCATTGCCC 9287 28 100.0 33 ............................ TAAAAAAAGCTGGTATAAATACCAGCTTAATAA 9348 28 100.0 33 ............................ CAAACTTATTAAGACTTTAAAGGAGTACTAAAA 9409 28 100.0 33 ............................ CGGTGGTGCAAGAATTGGTGTCGAAATCAAAGA 9470 28 100.0 34 ............................ CGAAGAATCTACCCATTGATTAGTTCCAATTTCA 9532 28 100.0 33 ............................ TTATTCTTCGCTGATAGTTTCGATCATTGGCAA 9593 28 96.4 32 .....................G...... TATTCCTCTAACTTGGCTGATGAAGTAGCCAA 9653 27 75.0 0 ..G..T..........A.A.T..-.A.. | ========== ====== ====== ====== ============================ =================================== ================== 27 28 98.9 33 GTATTCTCCACGTAAGTGGAGATGATCC # Left flank : ATCAAGTTTTTTGCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTGCTATTTTTACTAGTATCACGTCAGAGAGAATATTTAGCGGATATTGGTTCAGTTGATTTGACACGTGAACCAAGCGGCTTAATTTCTGCTCTGTCTAAACTTGAAAAGCTAGAAGAAGGGGAGGGTACTCCACAAATTGGCTCACAAGATTTAGCCCTACAACATTTGTATTTTAATTTTCCGAGTGCTCATAATTGGATTAACTGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAGCGTTTAGAAAATAGTAATCAGATAAAATAAGATAAGCAAGACCAAATATCATGAAATGGTATTTGGTCTTTTTGTTGGGTTAAAATGTAGGTTAAGCACTTTATTTTTTGTTGATAGAAACTAATGGAAAATGATATTATTTGAATTAGAGAATGGCATTATATCAGGGATCTTTTAGT # Right flank : CTAGGATATTAGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGACGCGATAAGTAGTAGTCATATGGTTTACTGGCCATAAAGATCATGAGAAGAGTTAAAAATTAATCACTCTATAAGTGACCTTTTTGATTTTTAATTAGAGTACTTACTATATTGTGTAAAACAAAATTATCGAAATGGTAAAGGAAGAAAATCAACTGTATTATTGGCCCATTAAACTTATTAAGAGGAAGCTACGATTAGAACTATATAACGTTGATGCTAAAGTAATTAAGCTAGGCCCTTTTGGGAAAAGTAGTGTACGATAATTCTGAATTTAAAAATTGTATAGTGCAAAAATCAAGCCTTTAATCTCTGTTCCGAAAAGAATGTCGAACCTAATTCAGCGAACTTAAAAGTTTTATCTCATTCATTAAGCGCTCTGGTAGCGCTTTTTGTTTTGTAATGGACTTATCGCTACTGATAGATAATCTAAAAAAAGTTAGTTACAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTAAGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1-696 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIBA01000017.1 Lactobacillus johnsonii strain UMNLJ50 johnsonii06I9S12117_Average_coverage:_124.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 97.2 30 ....................T............... CCGAAATCATTTCAGTAAATCCATTTATCA 67 36 97.2 30 ....................T............... AAAATGCCTTCCTGCATAGAAAATTATATA 133 36 97.2 30 ....................T............... TAAGCATATAACTAAATTTTTTAGAAATCA 199 36 100.0 30 .................................... TCCCCATTTTCTTCAATTTCCTTATAATAT 265 36 100.0 30 .................................... TAAGATGGGCAACTGGTACGACATTTAAAT 331 36 100.0 30 .................................... AAGTCAAGCTTTGGAAACTATTAATGCTAG 397 36 100.0 30 .................................... TGCCTTCGCGGCGAGCGACCTTGCTTTATG 463 36 97.2 30 ..................................C. AATCAAATTGGATTGTTGTATAATTCCCTT 529 36 97.2 30 ..................................C. AAGATGCAGATCACTTGCAAACGCTTGGTA 595 36 97.2 30 ..................................C. CTTGTATACGGCCACATCTAAATCTTCTTT 661 36 83.3 0 .......................A..A..A.AA..A | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.0 30 GTTTTAAATGTATGTCATATCAATTAGGTTATGAAC # Left flank : | # Right flank : AGCTATTCTAAGGACAGCTTTTTTATTTTTTAAAAATAAATAACAAATGTGTGAATATTAAGAGAAACATAACACTAAGTAAAAAGTTATACTATCAGCTTTGCGCCTAATTTGCGACATTTTATAAATAACTAGTAATTATCTGTTATAGTCTTTTTGTATGGTGGAGAGCACCTTAGATCGAGACGATGCAAAAGTATGGGTGATTGCTAGATGAATAGAGCTAATAAAGGAAGATGTAGATATATAGAAACGGGATTAATGACAGTCAATGATGTTATTGAAGAGGTTTATTTAGCATGGCTAAACGATGGATCTCATTGGGTTAATAAAGACAAAACCGGTATATTCTGTAATGCGGCAAATCCGGAAGAGGAGAAACTAGCAGATGAGATAGCCCAAAAAGCAATGAAGGGTTTTAATTTTCGTGGCAATGTTGTATGTCGCAGAAAATATAATCCTAGACACTTATTGGCTCTTAAAAGAGTTGTTATCTCTTC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATGTATGTCATATCAATTAGGTTATGAAC # Alternate repeat : GTTTTAAATGTATGTCATATCAATTAGGTTATGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //