Array 1 58143-57961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETT010000063.1 Thermoactinomyces intermedius strain NRRL B-16979 contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 58142 37 97.3 37 T.................................... CTCGAGCTACCAGCATTGGCATGATCCAATCTCTTAA 58068 37 100.0 34 ..................................... AATTTCCCGAGCTTAAATAAGCTCACTTAGAATC 57997 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 36 AGTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Left flank : CCTCTTCTAGAGGATTGAAACTTTTGTTTTATTTTTTGTTTCTTTGATACCAT # Right flank : AAAAAAGCCCTCTCCGGATATGGAGAGGGCTTTTAATTATTGCCCAGGCATATGGAGATAATGGAACGGATCGGCCAATAATTTATCAAATTGACGGCTGACTGAATGATATCCGATCGCATATGCACCGAGCCTCGGAGCCCAGGCAGCATAACACCGGCAAGCATTGATGACACGTTGCTTGATGGTGTTATCCGTGGGAGTATCTTTCCAACCGCCGCCAGGAATCGCTGCGCCACGGGATTCATAGTCATCCCTTGTGGCCATACTGATGATAAAGCGGACATAATATTGAATTGCCCCTTCATCATAGAGATCCTGCAAAGCTTGTCCACATGCTGCATGGTCCTGGATGGATATCGTGATAACTCAAGGTATAGTGGTCCGCATCCGGATAAAGGTCAATATACTTTTGAATTATGTTTTTCGCTTCATTCACCGTTACACTTTCCCCGCCGTCGCTGTTCGGATCATCAAGATATTCAATATGCTGATTTTCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 4236-3830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETT010000085.1 Thermoactinomyces intermedius strain NRRL B-16979 contig_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4235 36 100.0 35 .................................... ATTTTGGTAGTGTTTTCGGATGTTTTTTCAACCGT 4164 36 100.0 41 .................................... CCTAGTAGTTCGTCAACTTCCTTCTTTTGTTCGTCCGTTAG 4087 36 100.0 36 .................................... TTATTAACAGGCTCACTGGTGTACTACCACTACACC 4015 36 100.0 39 .................................... CTTCCAAACAAACAACTTTTCTGTATATAGCATAGTTCC 3940 36 100.0 39 .................................... ACCCAAACCTCGTTCAGATCCTTACATCCCTGATACACT 3865 36 94.4 0 .....................T.G............ | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 99.1 38 GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Left flank : ATTAATCCAAAGATCGGCGGCACTTTGATGCTGATTTCAGGGATCGGCGGATTAATTAGCATCTCGATGTTCTATGTATTAGCAACCGTGTTCCTTGTAATTGCAGGATTAATGGGAATCTTCCGCAAGGATAAACAAAAAGAAATGTCAGCATGAACCTAAAGGTGGGATTTTCCTCTTCTGGAGGATTACAAAAACAGCCCTCTCCGGGAAATGGAGAGGGCTTTAATATTAGAACTGAAGGTTTACAAGAATTTTATTTTTTTGTAGACTGAAATTAGTTGATATTTTTGATGTTCATACAAGGATTTATCGAGCGCCTTGATATGTCAAAAATCCCCGGGGTTGCTCGTAAAAGCTGAAACCCGCATGAAATAAAGGAAAAAGCCACTTCGTTTTGACTTGATACATAAAAAATAACTTAAATGCTCTTTAAAAAACGAAGGTGCTCGAAAAACCATATTGAACCTCAAGCGTGTCAAGGGTTTCAGACGCATGCA # Right flank : AAAAAAGCCCTCTCCGGATATGGAGAGGGCTTTTAATTATTGCCCAGGCATATGGAGATAATGGAACGGATCGGCCAATAATTTATCAAATTGACGGCTGACTGAATGATATCCGATCGCATATGCACCGAGCCTCGGAGCCCAGGCAGCATAACACCGGCAAGCATTGATGACACGTTGCTTGATAGTGTTATCCGTGGGAGTATCTTTCCAACCGCCGCCAGGAATCGCTGCGCCACGGGATTCATAGTCATCCCTTGTGGCCATACTGATGATAAAGCGGACATAATATTGAATTGCCCCTTCATCATAGAGATCCTGCAAAGCTTGTCCACATGCTGCATGGTCCGGATGGATATCGTGATAACTCAAGGTATAGTGGTCAGCATCAGGGAACAGGTTGATATATTTTTGGATTACACTTTTGGCTTCATTCACTGTCACATTTTCCCCGCCGTCGCTGTTCGGATCATCAAGATATTCAATATGCTGATTTTCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1608-1417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETT010000086.1 Thermoactinomyces intermedius strain NRRL B-16979 contig_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1607 36 100.0 47 .................................... AATTCACCTTCACAAGCCAGTGTTGCGAATGTCGCCCCGCTGCTTTT 1524 36 100.0 36 .................................... ATCAGTCTACGAAGATTCTGCTTCGCCCTTCGGCTC 1452 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 3 36 100.0 42 GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Left flank : ATATTGAACCTCAAGCGTGTCAAGGGTTTCAGACGCATGC # Right flank : CCTTCTTGGCAACTATAAATATTTTCGTCTTAGATTTTAAAGTTCGGTAAGTCAAATAGATTAAAATGCCTAAAAAAGTTGAACCAATCCAAATAGTTAAACCATAATTATCAACTAGTTTTTTCCAATCAAAAACCCAAAAATAGAGAATAGTTATGTGACAGATCACCAATAGCAATGTTATTGAAGGTAATATTATCCTCTGAAATATCATTTATCATACCTCCTATGTAGATTTATAACTTTTTAACAAAAAATTACCATAACTTTATATTTTAAACCCGTGGTGCTAGTTGAGCGTTAAGACTCAACTAGCACCACGGGTCATTAATATTGTTTTGTTATGTTATCGATAGCTAAATTCCAAAATATAGTCTATTACTTTTGCAGAAAAAGCCACGCCGGTCTTTTCGGCTGACCGCCTCCTTGCCTATGGCAATCTGGCTGAAGCCTGCAAAGACCGGCGCTCGGTCTGTTCAATGAAGCACGGTGCAAGCGGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //