Array 1 816463-817711 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCN010000001.1 Salmonella enterica subsp. enterica serovar Java strain 13-SA01718 000000F-arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 816463 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 816524 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 816585 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 816646 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 816707 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 816768 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 816829 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 816890 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 816951 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 817012 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 817073 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 817134 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 817195 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 817256 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 817317 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 817379 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 817440 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 817501 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 817562 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 817623 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 817684 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 832990-834484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVCN010000001.1 Salmonella enterica subsp. enterica serovar Java strain 13-SA01718 000000F-arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 832990 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 833051 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 833112 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 833173 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 833234 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 833295 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 833356 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 833417 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 833478 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 833539 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 833600 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 833662 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 833723 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 833784 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 833845 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 833906 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 833967 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 834028 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 834089 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 834150 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 834211 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 834272 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 834333 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 834394 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 834455 29 96.6 0 ............T................ | A [834482] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //