Array 1 1106903-1105214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047141.1 Ligilactobacillus animalis strain P38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1106902 36 100.0 30 .................................... ACCGACGATTGTGGCTAAGCTCTCACCTTT 1106836 36 100.0 30 .................................... GCGCAAGCACAATAACGGTAACTAGATAGC 1106770 36 100.0 30 .................................... ACCTCAAAGTGCATATGTTCAAATCGGTAA 1106704 36 100.0 30 .................................... TAAGCGTCTGTTTCTTGTAACGCCTTGACT 1106638 36 100.0 30 .................................... TTCCCTTTGCCTTCGATAACTAACCCAATA 1106572 36 100.0 30 .................................... CGAGAGAATTTCAGCTACAATTTTCTGGAA 1106506 36 100.0 31 .................................... GACCACCATTAGCCATCATTCGATGACCACG 1106439 36 100.0 30 .................................... ACCTAAAGTTGACAGTAGCGACGCACAAAA 1106373 36 100.0 30 .................................... TACTGGCACGACAGACATTAAGGCAACTGT 1106307 36 100.0 30 .................................... CAAAGGAGCTATCGCGCTGTTTGTGTTGAT 1106241 36 100.0 30 .................................... AGTTATAACCCACCAAGAAACCCATATGAT 1106175 36 100.0 30 .................................... ATATTGCCCAAGCGTAATGCCTATATCGTA 1106109 36 100.0 30 .................................... AAATTTACAAGATGCAAAGGGAAATAAGGT 1106043 36 100.0 30 .................................... AATGGTCAATGATGCTGTTGATGGTTTAGC 1105977 36 100.0 30 .................................... ATGTCTTATGTCAATCAGAAGGCTGATCAA 1105911 36 100.0 30 .................................... CAAGTATGCTTCGTTAGATGTCAAAGTGAG 1105845 36 100.0 30 .................................... CGTATTCATCGATGATTTCTTTTACGTCAT 1105779 36 100.0 31 .................................... AAACGTAACAGCAAATAGTGTTACTTTGAAT 1105712 36 100.0 30 .................................... CTTCCACAACGACATTAAAACCAAGCGAGA 1105646 36 100.0 30 .................................... TTAAATCTTGGATCATGAGCAACATCAGCA 1105580 36 100.0 30 .................................... GTTAAAGACGCTTTCGTAAAGGGGGCACAG 1105514 36 100.0 30 .................................... TTGCGTTGTTCATGCTCGCACCGTTTACGA 1105448 36 100.0 30 .................................... ATCCAGATCTTGGACCACGTTTATTAGACG 1105382 36 100.0 30 .................................... AGCATTTATCCCCACAACATCAACTAACTC 1105316 36 100.0 31 .................................... CATTGTTAGTCTAATGGCTAAAGGCCTATGT 1105249 36 80.6 0 ........................AA...TT.GT.T | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.3 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TGCGGATCTGGAAAGACAATTTGGTGAAAAAGAGGAAGTTAAAGCCAGACTTGAGTTATTAGCAGTGGAGATAGCAAATATTATTTCGAGTGAATGTTTAGAAAATGAGTTAGATCTTGAGTATGATGAGATCACACTGCTAGAATTGATAAAGGCGATGGGTGTAAAAATCGAAACGACGATGTCATCGGTTTACGAAAAATGTTATGAGATAGTGCAAATTTTCAAATACTTAAGTAAGAAAAAATTATTAGTTTTCTTAAATGTTGGTGCTTATTTGACAGAAAAACAAATAAGAAGCTTACTTGAGTACATTGAACTGTGCAATTTGAATGTCATATTCCTTGAGCCAAGTAAGTTGTATGACTTACCGCAGTATATTTTAGATAGTGATTATTATTTAGAGTATTTGAATAGCTCTTCGGAGTCATAGAAAGCGAAAATTTTGCTAGAATTAGTAGCGCGATTACGAAACCACTGTGCCATTTTTTGCATTTGAG # Right flank : TTTCCGGTTGAGAATATGTGCAATTGAAAAATATTTTTACAGTATTTCTATTGACGTCAACTTTATAATTTGATATTATATTAGCGTTGTATTTGTGCATGCCACAACTGCAACCGCACGTTTTAAGTTCAAGTGCTCTCTGAGCCACTACATTACGGCGAGTCTAAGTAAAATACAAGGAGGTGCACATTAATGTACGCAATTATTGAAACAGGTGGTAAGCAACTTAAAGTAGAAGCTGGTCAAGCTATCTACGTTGAAAAGTTGGCTGCTGAAGCTGGTGAAAAAGTAACTTTTGATAAAGTTGTTTTAGTAGGCGGCGAAAACACAGTGATCGGTACACCTTTTGTTGAAGGTGCTACTGTTGAAGGTACTGTTGAAAAGCAAGGTCGTGCTAAGAAAGTTGTTACTTTCAAGTACAAGCCTAAGAAGCATCAACACACAAAGCAAGGTCATCGTCAACCATACACAAAGGTTGTTATCGACGCAATCAACGCATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1116349-1116913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047141.1 Ligilactobacillus animalis strain P38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1116349 36 100.0 30 .................................... AAAATCTACGCCAGACGATCTACAAACATC 1116415 36 100.0 30 .................................... GCCAGCCCAGCCAGTGACCCACTCTTCATG 1116481 36 100.0 31 .................................... CGAAGGTTTTCTACATGATAGTGTGCAGCCG 1116548 36 100.0 30 .................................... ATCAAATCCGGCTTGATAAAGATCATCGTA 1116614 36 100.0 30 .................................... CTTATCAAGACATCATAAACCAAACAGTCT 1116680 36 100.0 30 .................................... TTCGCATATGCACAAAGAAGATTAACTAAA 1116746 36 100.0 30 .................................... TGAGCACTTGCTTTGCCATTACCAATCATT 1116812 36 100.0 30 .................................... TGTGGAAGAAGAAGGCGGAGCTAACCCACC 1116878 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TATTCGTCTAATTCCATTGTTTTGATCCTGTCAAGTGGCCATTCTTTCAAAAATTCTTTTGCCAACTGCATATTTTGTTTCTTCCATGCCTCTGCTCGTTTTAACAGTGCTGATTTATTTTCAAAATACCAATCCGAAAAGTGTTTTATATCGATTTTTACCATCCTGTCACCCCATCGTTTTTATATAGCATACAATAAGCTTAGTAGCCGATGCACCTAAAACGCATATAAATTTAGACAAAAAAGTTCCATTAGAAAATTTTTCTAATTTCTTAAAAAGCATCTCAATAGTTAGATAGTGACTCTAACAATTAAGATGCTTCATATTAATCTAGTACTGAAAATTTTAGACAGTTATATTTTGGCTTAACGTAGTGTATAATTATAATTGAATTATGTATTACGTTAATGAAAAAACATGGAATCATACAAAACTGAAATCTTGCTAGGATAAGTAGCGCGATTACGAAACCAAAACGACATTTTTTTGCATTTGAG # Right flank : CAAGCGAAGAGATTGGCGAAGAGCGTCAATAGTTTTTTTGCATGACTCCATAAATGAGTTAGTGCACTAGAACATACTGAATTATTTTAGAACTATTATTTAACGGCTTGATTCTTTTAGCAGAATCAAGTTGTTTTTTGTGTAATCACAAAAATAATATGATGGTGTTTTGAAAAATCTTATGTTGTATCCTACAAATAAAAACTAGCATGTTGACCTCTGTAATACTTGATAGACAGCAAAAAAGCGCCTAATCAATAGGCGCTACGTACTTACCTGTTAGCACACTTCCATTTTTCCAATCCTTTAAATACCAGGACAACACTTGCAATCACTAATAAACTAACTAAAATATTAACGACTAAGTTCACTTCAGCAGAAGGCATCAACTTAGCAATAAACAAACTATAAAAATACTGCGTGATAAAAATAGCAACTACAATGGCAATACTCATTTTATCTTTCATGTTCAGGAGCCTCCTTGTGATCACAAAGACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //