Array 1 226252-227377 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOT01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 151 NODE_1_length_495943_cov_9.26571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226252 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 226313 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 226374 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 226435 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 226496 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 226557 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 226618 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 226679 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 226740 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 226801 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 226862 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 226923 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 226984 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 227045 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 227106 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 227167 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 227228 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 227289 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 227350 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243636-245742 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOT01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 151 NODE_1_length_495943_cov_9.26571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 243636 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 243697 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 243758 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 243819 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 243881 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 243942 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 244003 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 244064 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 244125 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 244186 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 244247 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 244308 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 244369 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 244430 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 244491 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 244552 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 244614 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 244675 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 244737 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 244798 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 244859 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 244920 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 244981 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 245042 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 245103 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 245164 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 245225 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 245286 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 245347 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 245408 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 245469 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 245530 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 245591 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 245652 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 245713 29 89.7 0 A...........TC............... | A [245739] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //