Array 1 17620-16797 **** Predicted by CRISPRDetect 2.4 *** >NZ_QENO01000003.1 Bacillus altitudinis strain 123 NODE_3_length_441636_cov_68.1421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 17619 32 100.0 33 ................................ TCTTTCCTGAAGCGTCGCTGACTTTTTTGGTCA 17554 32 100.0 33 ................................ TCTTTCCTGAAGCGTCGCTGACTTTTTTGGTCA 17489 32 100.0 33 ................................ ACTCATGGCATCTAGTATTGGTGTCTCTGTGCT 17424 32 100.0 33 ................................ TGGTATATCAATGGCTTTAAGTAAATGGCTTTC 17359 32 100.0 33 ................................ TTTTCATTGTCCTTTGAGGACTTGAACATGAAC 17294 32 100.0 36 ................................ GACTTTGCCAATCAAGGCATCCCGAATCAAGGCGGG 17226 32 100.0 36 ................................ TAGCTGGCGTCGCTAACCTGATCAAAGACGTACCAA 17158 32 100.0 34 ................................ CGTATTCAATATAAAAACGGCCGCATTCTCGACA 17092 32 100.0 34 ................................ CTTTTGAACCCACAACGGACGATCGTCTGCTATT 17026 32 96.9 33 .........C...................... CTGGGGCTTACGAGTTACGACTGATCAGCATTT 16961 32 96.9 34 ...........C.................... TTATTGTAATCGAATCGACCTTTAGCCCACAGAG 16895 32 90.6 35 ......T....C.......T............ AACAAAAACGATTTTAAAATTGATGCTGCTGCATC 16828 31 78.1 0 ........T..C......A....-..C...GG | A [16808] ========== ====== ====== ====== ================================ ==================================== ================== 13 32 97.1 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTCTTTGGAAGTAGGGGGATGTTTTTATATGATGGTTGTGGTTACGTATGATGTCAGTACAATTGATAGAGCTGGGAAAAGAAGACTGAGGAAAATATCTAAAATTTGTCAAAATTATGGTCAAAGGGTACAACATTCTGTTTTCGAATGTATTGTAGATTCAACGGAGTTTGCTATGTTGAAGAATAAGTTGTTGCAAGCTATCAATGAAGAAAAAGATAGTATTCGATTTTACCAAATAGGTAACCAATATCGAAAAAAAGTAGAACAAGTTGGTGCAAAGGAAACAATATTTGTAGAAGATCCTTTTATTTTTTAGGTGCGAATGTGAGGTGCACATAGTTTCCCTGAATCATTCGCACTTAAAAAAGAAAGATTTTTCGACAAACTCTATCTTTATGTGTCTCAATAATTTATATTTTGTATAAATAGAAGTATCTTTTTTAACTGATTTTGATAAAAAAAGTAGTTTTATTTGTTTTTTTTACTAAAAATCGCC # Right flank : TCTAACTTATTATTTATGTTGAATTTTTAATGGATGCTAAATTATCATTCTTTTCAAAAGATAGTAAGTTTGCATATTTTTATTTCAGTAAAATTCAATAGGAGTTCAATAACCTCTTTTCCTTCAAATTTAAAGTGAAAGAGGTTTCAATGAAGATTGATCAGCCTATATATGCTGACAGCGTTTTGTTTGGCTTTTGTCATAAACAATGTACCTCGTTTGATGCTGCCCATCTATATACTTTCAATGATCGGGCTTATGTTCTGTCTCGGTCATATTGCGCTCCATTATCTACAGCGGATCAGATATTTGTTATACGATGAGAAACAATTGAAAGAGAATCAAATAAACAAACCTCCCGCTAAATGAAGGAGGTTTTTTACTTGTCTGTTTTTCAATGATTTTCTCGTTTGACTCCTTGAATTGTCTCAAAAGAGAGACGATGTTCCTCGTAAATCTGATTTGGACAATCAATAAGAGCATAATGATCCACGAGCTAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18325-17898 **** Predicted by CRISPRDetect 2.4 *** >NZ_QENO01000006.1 Bacillus altitudinis strain 123 NODE_6_length_268865_cov_82.2097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18324 32 100.0 34 ................................ AAAAATAATTGGCCGTTCTCCCAAATGAGTACAA 18258 32 100.0 33 ................................ ACGGTTAGGGTTTTCGGTTAAAAATATTCGTCC 18193 32 100.0 35 ................................ CGTTCATCCCACATCGGCGACACCTCCGGTTAAAT 18126 32 100.0 34 ................................ ACTTTGATCACTCCATGTGATATAATTAAGATTC 18060 32 96.9 33 .............A.................. TCTGAATAGACCTTTTTCAATTCAACGGATTTA 17995 32 100.0 34 ................................ AGCGATGACAAGGCTCTCAAGCACATTGTATTTT 17929 32 75.0 0 ..........C.....A...A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTGCGTGGATTGAAATTCGCGATGTTGAGGGAGACGCGGTCTACGGCAAATGTCGCACTTTACATGAGTGCGTGGATTGAAATATTTCAAGAACTTTTGTAATGGCTCTCAAAAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATACAGTACCACCGCCTTTTAGATAACGCATTACAGTCGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGACAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCAACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATAATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACAGCAATACGCCATTGTCTAAACTTCATTGTAGGCGAAATGATTATTTCCTCAATCTCATC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 20193-18611 **** Predicted by CRISPRDetect 2.4 *** >NZ_QENO01000006.1 Bacillus altitudinis strain 123 NODE_6_length_268865_cov_82.2097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================== ================== 20192 32 100.0 35 ................................ AGCAAAAAGCTGGGTGACAGGTGATGCTATAAAAG 20125 32 100.0 33 ................................ AATGCCTATAACGTTTCATGATTCATCAAAAAT 20060 32 100.0 34 ................................ CCTGATATTAGCGTATTGAAGCTAGTATCAGATA 19994 32 100.0 33 ................................ AGACAATTCATGAAAGAAACAAATTTGACTGAA 19929 32 100.0 37 ................................ TTGACGCTCATCTTGCTGACGGTGTAAAGCATGTGAC 19860 32 100.0 35 ................................ AGTATCCCGCCAACTCCTGATGCGTTCCCTGATAT 19793 32 100.0 34 ................................ TATATGACAATGAAGAAAAAGCTCAATTTATATC 19727 32 100.0 34 ................................ ATGTTACAAATCGAATACGATACATCATGTTGCA 19661 32 100.0 33 ................................ ATGACTCATCAAAAATTGTCATGGGTGCATTGA 19596 32 100.0 33 ................................ ATGACTCATCAAAAATTGTCATGGGTGCATTGA 19531 32 100.0 33 ................................ TATTATGAATACTCTTGTCAGGCAGAAGCTTAA 19466 32 100.0 33 ................................ ATGACTCATCAAAAATTGTCATGGGTGCATTGA 19401 32 100.0 33 ................................ TATTATGAATACTCTTGTCAGGCAGAAGCTTAA 19336 32 100.0 37 ................................ TTGACGCTCATCTTGCTGACGGTGTAAAGCATGTGAC 19267 32 100.0 34 ................................ TACCCGGACAAAGGCGCCAAGAATAACGGTATCG 19201 32 96.9 34 .......................A........ AAAACATAGTTTTTAGCAACTCGTTTCGCATTAG 19135 32 96.9 34 ............G................... AAAAAAGATGTACCACGGATGCCATGAATATCGG 19069 32 90.6 130 ...........T.......T.......A.... TACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCGGGGGTGAAAACTTAATTCCTATATAGAAATTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA T [19040] 18906 32 96.9 34 .............A.................. AGAAAAAGAAAAGTGTGATGAAAAAGAATATCCA 18840 32 96.9 35 .............A.................. TCGCGATGTTGAGGGAGACGCGGTCTACGGCAAAT 18773 32 96.9 33 ........T....................... ATTTCAAGAACTTTTGTAATGGCTCTCAAAAAA 18708 32 96.9 33 ...........T.................... ACAGTACCACCGCCTTTTAGATAACGCATTACA 18643 32 90.6 0 ...................T..A....A.... | T [18614] ========== ====== ====== ====== ================================ ================================================================================================================================== ================== 23 32 98.4 38 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTGGGCGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAAATGTCCGTGAACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGGGTAAAAATGTATATTTCATGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGACAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAAAAATAATTGGCCGTTCTCCCAAATGAGTACAAGTCGCACTCTACATGAGTGCGTGGATTGAAATACGGTTAGGGTTTTCGGTTAAAAATATTCGTCCGTCGCACTCTACATGAGTGCGTGGATTGAAATCGTTCATCCCACATCGGCGACACCTCCGGTTAAATGTCGCACTCTACATGA # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //