Array 1 47715-45246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDT010000009.1 Parabacteroides sp. ZJ-118 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 47714 37 97.3 36 ..............................T...... TGCGTTAAGGTCACTGGTGAAGCGAAAAGAATGTCT 47641 37 97.3 36 ..............................T...... ACGTGTTTCATCCTTCAAAAGAGGTGCGCAAACCTC 47568 37 97.3 36 ..............................T...... AACCGCTAATCTTCTCGACAAGTATAGGCGGGCGTA 47495 37 97.3 35 ..............................T...... ATTTGCAATGGCCGCGCCTATCTTTGGAATGTCCA 47423 37 100.0 37 ..................................... GACGACGAAAAACGTTCCGTTGGAAACAATGGCTATT 47349 37 100.0 38 ..................................... TGGTATCATGCAGGACTCAGGGAAACCTGTCGTACTGA 47274 37 100.0 37 ..................................... GAAAACGTTTTCTTTATTAGTCGAGGAGTATGAATAA 47200 37 100.0 35 ..................................... TGTTTCAGCCACAATATAAAGTTTAAAGTCCTCAA 47128 37 100.0 36 ..................................... AAGCTATGGAAATGTGGATAGCTAGAGATAGGAATA 47055 37 100.0 38 ..................................... ACTTTTTGATGTGTAATGAATCTTTATACCTGTAAGCG 46980 37 100.0 37 ..................................... CCGTTAAACGTATGTCAAAATACGTTTGTAGTGCCTG 46906 37 100.0 39 ..................................... TGTGTGTGATACTATTCACATGTATTGAGTTTAGAAAAG 46830 37 100.0 37 ..................................... TTAAATAAGGAAATTCTCTTTATGAAGAATTTATCCA 46756 37 100.0 37 ..................................... GGGTAAAAAAGTTAAAGGAAGAAGTATCTCGCCTGCT 46682 37 100.0 39 ..................................... CGTCCAATGGCAAGGACGTTGAGCGGGATTCTGCCGGTG 46606 37 100.0 36 ..................................... GGTTTTGTTTCTCCGTAAACCGTCTATGAATGTCCG 46533 37 100.0 35 ..................................... TAGAAATGAAAACGTTTATTATGCTTGTGGCAGGA 46461 37 100.0 35 ..................................... AACGGGTAAAAGAACTAAAAGAACAAGTATCTCGC 46389 37 100.0 37 ..................................... TGCTAGGCGAGATAGCAGCCATTGAGGCTGAAAACAC 46315 37 100.0 35 ..................................... AAAGTCGAAAGCTATCGAAGCAATGAAACGAAATT 46243 37 100.0 37 ..................................... CTTTTTAACCCTCTACAGTACCTGTCTTTGGACAGGA 46169 37 100.0 37 ..................................... TGCGTTGTAATCTGGTTGGTCGTTTCATGCGCTAAGG 46095 37 100.0 39 ..................................... ATATTGATAACATATTCAGCCATCACAATTGCAAGAACT 46019 37 100.0 39 ..................................... ACTGGAGCAGCAGGAAAGGACAGTCAACGAATGGTTAAA 45943 37 100.0 38 ..................................... ACGGTAAAAGAACTAAAACAAGAAATATCTCGCCTTCT 45868 37 100.0 36 ..................................... AGTAAAACAACTGAAAGAACAAGTATCTCGCCTGCT 45795 37 100.0 38 ..................................... AGAGTAAAAAAATTAAAACAAGAAATATCTCGCCTAGC 45720 37 100.0 36 ..................................... TAATGTTGAGTTTCATATGTCATCTCACTATTCTAG 45647 37 100.0 35 ..................................... GAGAGAAAGGATTCGTATGTTGGCCAAGAGGCCGA 45575 37 100.0 36 ..................................... AGGAGAACAGGAATGGGAACGGTGAAAGAATTAAAA 45502 37 100.0 37 ..................................... GGGTCGCAACCTGACCATGCTAAGAACCTGGCATGGT 45428 37 97.3 37 ..............................T...... TTTAAAATATTTTAAAGAATATCAGAGAGTAATGGAA 45354 37 97.3 35 ..............................T...... AACCAACTAAAGCAAGAAATATCTCGCCTTCTAGG 45282 37 97.3 0 ..............................T...... | ========== ====== ====== ====== ===================================== ======================================= ================== 34 37 99.4 37 GTCTTAATCCTTATTCTAATGGAATTACTTCTCTGAT # Left flank : AGGGCGCAAAGGGCGCATCTTTACGAGCCTTTATAAAAACTTTTATATATATATAAATTTACATCGTACTTACACAGTAAGATGAATATTTATATATATATATATTTTTAGCGGAGGTCTTGTTTTTGCGCCCTTTGCGCCCTGCTCCTGTTTAGGGAGGCGGCGTTGTTTCCGTCTTATTCTTTTGATTCTTAGTGTTTTCGGGTTTCCCAGGGTCGCTGTTCTCCTTCTCCTGCTCAGGGCGCAAAAAATTGGCTTTTACCTGTTCCGACGTGATCTCCGTGATCTCAAAAAGCCGTTTTTCCGGCGATTTCGTGAGCAAAAAAGCCTGTTTTTTCAGTACCTCGCTCGATGTAAGTACACGGAAACGCGTCGGTGCGATACGTAAAAACGCTCTTGTTTTCGCCTTAATTTCGATCTGTATAAGATACCGTGGTGTGTCGAGACGCTCCGGTTTGCGGAAGTAGGTGACATTGTGAGGATAAGTTCCAATATAATGA # Right flank : ACCAAAATTCTTAAATCTCTATATTTCAAATCTATACCTTATAGACTCATATACATTCACTTGTTAATTCACAAATATTAACCCGTTTCTAAGAGACTGCAAAGATAGTGCTTTTTTCAATAAGTCAAAGAGCGATTTAAGCGAAAAAGACTCAAAAGAACAACGTATTCTTATTGCGCATGATGATATCCAACGCGATCTTTTGGCCGATTATCTTCATCGAGCGAAGATAATCCGGGGAGATAGGGACAATCAAGATGCTATCCTTGTTCTCGTAAGCCGCTTGGACTTCCGTTAAGTCACTACGAATATGATCGTATTCCTCCATTCCCAAATCCGCCAAGAAGATAGAACGCTGTATACGTACACAACCTTTGCGCAGCAAGTATTTGGCCACTTGATAGCGAACCTTATTGCTCTCTATGTCATACATCACGAAAAACAACATATTCGAAGAGGGCCTGTCAGCCCGATTAACGATTCCTAATACCATTTCTATC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTCTAATGGAATTACTTCTCTGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1654-3204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDT010000026.1 Parabacteroides sp. ZJ-118 Scaffold26_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1654 33 100.0 33 ................................. CGTTATATTGAACAGATCTTATCTCATTTTGGC 1720 33 100.0 34 ................................. CAACTACCTTAGTGGTATACCTTGAAGAAATTTC 1787 33 97.0 32 ................................A TGTGCAAGCCGGTTGTACCAGGCGATAAGTTT 1852 33 100.0 33 ................................. TGAGTCAAATCTTGATTTGTTCGATGGTGACGA 1918 33 97.0 33 ................................G TCTCGTTAAGAGCAACCGTAACGTATGACAGGC 1984 33 100.0 32 ................................. TTTCGTATCCTACTGATACACCTGAGTATATC 2049 33 97.0 33 ................................A GTGCTCCCTGCCGGGATCGAACCGGCGACCTCC 2115 33 97.0 33 ................................A TTATTTTATCACTTTAATTATATCGACCTTGCA 2181 33 97.0 33 ................................C TCTTAACGGTGTTGGTGCTCCTTTTGGATATAA 2247 33 97.0 33 ................................G TAATCCAGCAGCGGAACACGCTCTCCGGAACTC 2313 33 97.0 34 ................................A CTCATTTCTTCTTTGTACCTAATCGCCTGTTATG 2380 33 100.0 33 ................................. TAAAGACACTGACGTCACCAAGGCTTTGGCTGA 2446 33 100.0 34 ................................. TGGGCTATTGCTTCACGAGAGCTAACATCCGGAG 2513 33 100.0 34 ................................. TTTACACACACACTACCAAGACCTACCGCCGCGA 2580 33 97.0 33 ................................G AGGACAAGGGAGTCGAGGTATCCGTGATAGCGT 2646 33 97.0 33 ................................C TCCTCAGCGTCAAAGCACGGGCACATCTTAATC 2712 33 100.0 33 ................................. TAACACTGACCCGAAGCCCGCACCCTGTCGTAT 2778 33 97.0 33 ................................A TATCAGAGTACACGATGCCGAAAGATTTCAGGA 2844 33 97.0 32 ................................A TACCCATAAAGTTTTTATATGATAACATAGCA 2909 33 97.0 33 ................................C CTTTCCGAGGTCGCGAGGGCTCTGATCTTTTGG 2975 33 97.0 32 ................................A TTGAATATTTATACTCAGAATATCGAGGCGTA 3040 33 97.0 33 ................................C AAGATAAGAGACATATAGCATGAAACAGAAGAT 3106 33 97.0 34 ................................G TTGACGGTAACATCTCATCCGCTACCAAGCTGCA 3173 32 72.7 0 ....................-..A.AACGG.GG | ========== ====== ====== ====== ================================= ================================== ================== 24 33 97.0 33 GTCGCACCCCACACGGGTGCGTGGATTGAAACT # Left flank : ATGACTATCCGGTATTTCTGATAAGATGACTTAGATTATGTACATTCTTGTGACTTATGACGTGGATACAACAAGCAAAGATGGGGCTCGTCGTTTACGGTGTGTGGCTAAGGCTTGTATGGATTATGGACAGAGGGTGCAGAATTCTGTCTTTGAGTGTGAAGTGACAGATGCTCAATATTGTTACTTAAAGGAACGAATTAAGGGTTTTATTGATAACTCTCTTGATAGTATCCGATTTTATATTCTCAGTAAGAACGAAAATAGAAGAGTAGAAGTAATAGGGATTGAAACAGCCTATAAAGTTAATGATACTCTTATTATATAATGACGTTTGCGAGTATGGAGTATTACAAAAAAAGTAGTATTTTCGCAACTCATAATAATCAATAGATTAGTTTGTTTATAAAGCGATTGTTATCATGGAAGTGAAATAAAAAAACTGATTCGCATATTGATAAATCTAATTTATTGATCTATAATATATAAATATGTATACA # Right flank : GATATCCACCCACCCAAAACGGGGATATCCGTTCACTTTTCATGCTCTTTACCCTAATGGCGATGCGAAATTAGTCATTTTCTGGAAAAACCGGAGCAGACTGGGACAGTGCGCCGGAGGTAGCGGGTCTGAGCGGATAGTGATGGAACTGTTGACGCAAAGCCTCCGAGACGGTCATGTTTAGTCTGAACGACACGATGCGCTACTTCCTGTGTCCCGGCAGGACGGATATGCGCAAGGGTATCAGTTCGCTGTGCGGACTGGTACATGAGAAGATGAAGAGCGAAGTGAAGAACGGCGATGTGTTCATCTTCATCGGGTCCAGCCGTAAACTCATGAAGCTGCTTCATGCGGAAGACGGTGGCATGGTGATGTACGTCAAACGCCTGGAGGCAGGGCGCTTCAAACTGCCGGAATATGACCCCGGATCCAACAGCTATCCCATGGAATGGCGTGATCTTCTGCCACCAACAAAAATCAAGCGGAGCAGATTAAAAAAC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACACGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //