Array 1 1754339-1755165 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP055302.1 Mannheimia pernigra strain 16CN0041 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1754339	    32	 100.0	    35	................................	AAGTGGTGTTGAATTATTTGATGTACCTTTTGGTT  	
   1754406	    32	 100.0	    32	................................	CGTTAAGTGGTACAGGTTGCGAAACTCAAGGT     	
   1754470	    32	  96.9	    34	G...............................	AAGATTGCTTAACAGAGTTTAAGTAATTATGAGT   	
   1754536	    32	 100.0	    32	................................	TATTTTTCGATTCGAATTTTCAGTCGCATTTG     	
   1754600	    32	  96.9	    34	C...............................	GTTTTTTACATCGCTATTCGCACCCATTGGGCTA   	
   1754666	    32	 100.0	    35	................................	TCCGCATCGTGGTGGAGGGTTGCTGACAGTAACAG  	
   1754733	    32	 100.0	    33	................................	TATGTGCTAGATGATAGTCAAGCCATTAAGCCG    	
   1754798	    32	  96.9	    35	T...............................	TGATCGTGATGTTAAAGGACGTATTGAGGGCAAAA  	
   1754865	    32	 100.0	    35	................................	TGCAGAATTAAAAGGATCGTATAACGGCAGTGCAG  	
   1754932	    32	  96.9	    37	G...............................	CAGCCTGGTATCAGCAAGTTGAAATTGTCTCTCACTT	
   1755001	    32	  96.9	    35	G...............................	AATCGGAGCAGAAACAGTTTGCAAATGGCTACGCA  	
   1755068	    32	  96.9	    34	G...............................	TTAAATTAAATAGCATTGATGTAACTGTTGAAAG   	
   1755134	    32	  93.8	     0	G...........T...................	|                                    	
==========	======	======	======	================================	=====================================	==================
        13	    32	  98.1	    34	ACAGCTACCTACACGTAGCTGTGAGTTGAAAC	                                     	       

# Left flank :   TAGAATTATGATGATGTTAATTACTTACGATATTTCTTTTGACACCCCAGAAGGGCAGAAGCGCCTGAGGCATATTGCCAAATACTGTTTAGATTACGGCATCAGGGTTCAATATTCTGTATTTGAATGCGATGTCACACCCGACCAATGGGTTAAACTCAAACAGAAATTACTCTCCACCTATAATCCGGAAACGGATAGTTTACGTTTCTATCATCTCGGAAGCAAATGGAGAAACAAAGTGGAGCACCACGGAGCAAAAAAAGCGGTGGATATGTTCAAAGATGTTCTAATTTTATAGATTTTCTGTTATCGCTAGCTACTTGTTCTCATCAATATATAGGGAGGCTAGCGATTTTAAAAGTTCTTTAATAATTAATTAGTTAAAAATTTTTATAGCATATTACTGAATGTGCTATACTCAAATCACCCCCTGTAACGACTGCTTTAGCGAAAATCAGGTAATACAACCTGATAGCATAACGTATTTTGATATAGGG
# Right flank :  CACTGGTTCGGTAAATCGTGAAAATTCAGGATGTAATGGTCTAACCCATAGCAACAAACCAAAGACTATTTTTGATAAACTCTCTCAAAATGGAGACCAGCAAAATGGTTAAACTTTTTACCCCTGAGTATAAAAAGCAATGTGTTGAAATGGTGTTAGACGGCAAACATAGCGTCAGTCAAGTGTGTAAAATGATGCGAGTCAGCCAATCTGCCCTAAATCGTTGCTTGAATCGTTAGAAGCGGCAATTTCTCGCCGAGCAGCGGGGAATTCAGCGTTTGCGAGAAGGCATTTCCCACTCACAACTGTCCCGTTGTTTTTCGTTGAACCGTTCTACCAGCCATCGTTGAGAAAAATCGTCGCCTAATCAAACGTTGATGAGCTTGCAGGAAACGTTGCTATCCGCCTTTGAGGCAAGCGGTGAAACCTATGGCTCACGGCGTGTATCGCAGGCGGTGACGGATTTAGGAGTAAAAAGCCACCTAGAAGGGGGCAATTAA

# Questionable array : NO	 Score: 5.93
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ACAGCTACCTACACGTAGCTGTGAGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:51.61%AT]
# 	Reference repeat match prediction:         F [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.10,-2.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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