Array 1 189256-188625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017702.1 Companilactobacillus farciminis KCTC 3681 = DSM 20184 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 189255 37 97.3 29 ....................................G CGAGCAGCCTTTTCGAATTCATAAAGTTA 189189 37 100.0 29 ..................................... ACTGATTGCTTGGCTTTCTCATCGGTTGC 189123 37 100.0 29 ..................................... GGAATACCATACAAATTGGCGTAATAGCG 189057 37 100.0 29 ..................................... TGTGTATCATCAACCAAACCAATTGCTAA 188991 37 100.0 29 ..................................... CGTCAAGGTCAAGTTCCTTCTTGATATCC 188925 37 97.3 29 ..............C...................... AGTGGAATCATTTCTTCAATTCCTTCTAA 188859 37 97.3 30 .....................T............... TATCCTGAATTGCTTTGAAAATACTTATCC 188792 37 97.3 29 .....................T............... AATAATTACACCGGCATGCGTGAATCCGT 188726 37 83.8 29 ...........T......C..T.......G.T..T.. AGCTACAGTAAGGACAAAGATACAGTTAA 188660 36 81.1 0 ...C........C.C..........T-.C......T. | ========== ====== ====== ====== ===================================== ============================== ================== 10 37 95.4 29 GTTTTAGAAGTATGTCTTTCTATTTACTTAAGAACCT # Left flank : AATCTCAGTTCATTCAATCTCAATGCAAGTAGTCAAATGAGAATTATTTTAAAAAAGATAATCGAGGATTCACAAATAATGCTTAACGAAATTGAAAAAGTTAATGCCGATTTAAATAGCGTCGTTTTTGACTCCATTACTAGATATTCATTGCCCTTAACCCTTGATATGTATGCCAATTACGAGAAACTACTAAAATCAAAGGACATCAAAATAGATTTTAGTAGTTGGGCTAATTACTGTGATAAAATTATGGATGTAATCAGTTTTTATTCTGATTTCACTAATAAAAAAATGCTTATTTTTAACAACATTGGTCGCCTATTGAACGTTAATCAGTTAAATGAGATACATGCTTATCTAAAATCCGTTGATTTAAAGCTAGTTTCTTTAGAATCTTACCCTATGATTTTTAAGGAGGAAAAACTAAATGCTAAAGTCTATTCAATCGATAATGATCATGTTAGGTTTGATTATTAGAAGTTGATTAGAAAACAACG # Right flank : GCTATACTTATCCTTGTTAAGAGATTCAAATCAATAAATCATTTTTAGTATGCTTACAAGTACGTCATCTCAATTACTTGCCTTAGAAGTAAATCATCTCAAACAAAAAGCTCTAGTACAGAATCCCAAAAGATTCCAATACTAGAGCTTTTCATTTTTTTATTTCAAACTCTTCATAACATAATCACCCAAAGTCCGGACACGTTTCAAATCGTCTTCGTCTGGATCTTGATCAATCTTCACGGAGTCAGCGACTTGTTCGCCGTTACTGGAATTCAGTCGCATCGTGAAATAATCTACCGCACGACCAAAGTGAATGTGTCCTTTGGAGCTTGATCCTAACACGGTAAACTTAGTTCTTTCCAAGTCAACATCGGCCAAATCTTCATAAAAATCTTGAGCTTCTTCTGGTACTTCGCCGTCATTATAAGTGTATGTGTCAACAATTACAGCATCGTATTCAGAAAGTTCATAAGCATCGGTATCGATTATTTGTTCTA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTATGTCTTTCTATTTACTTAAGAACCT # Alternate repeat : GTTTTAGAAGTATGTCTTTCTTTTTACTTAAGAACCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1973820-1973456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017702.1 Companilactobacillus farciminis KCTC 3681 = DSM 20184 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1973819 36 100.0 30 .................................... TATTTAACACTCACAACAGTAACCCAAGTA 1973753 36 100.0 30 .................................... TAGCCGAAATTACCGCTTGGTTGAAAGCTC 1973687 36 100.0 30 .................................... ATATTTGATGCGTATTCAACGTTTAGTTGA 1973621 36 100.0 30 .................................... TACCTGCGAACATTAGTCTAGTGCCCCCCC 1973555 36 100.0 27 .................................... AATAATTATTTCTAAAAGTATCAAGTA 1973492 35 86.1 0 ...........CA........C.-...C........ | CT [1973482] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTTGTACCTTAAAGAATCTAGAAATAGTAAAAC # Left flank : AATTTCGTTTGGAAAATACCGGTTTACCAGTTTGGTTGATACTTTATAACTTAGATAGTTTTATCGCTCCAAGAGATATCGACTATTTATTGATTAAAGTTAAGGAGCTAATGAAAGAGTATGATTTGAAATTAATTTATTTGGGTAATAGTTTGAATAATATTCCACTAGATTCAAGTGAAATTGATGGTGTAGTGTTAGCGGCTGATGAATTTAACCAGTTACTGCCAATCGATGAATTGATGGAATCTATCAAGCTGCATTATCCTAATAACTTTAATATGTCCGAGAATGAGATTACTGATTCATTAAAAAGAATTATTCCGTTTATAGGAATTAAGGAAAAAGTGTTCATATCTAATAAAGATTTGGTATTATTAAAGGTAGTGAACGATATTTTAGGATATGAGACGTCGTATGATCTAAAATCTCAATCACTAACGGGTGCAGAAACCAAATTTTTGGAAGATTAATTGACGAATTAAGATTTTGAATTTGAG # Right flank : CCAAAGAAGACTAGATCATGGTGGAATCTAGTCTTTTTATTTTTGCAAAAGTGTCATTAAATTTAATAATATTACATTTTTTCTAATTAATTTTAACTTTAACCATAAATACCTATTGCCCAAATTAATATTCTCGTTTATGATAGTCTCAAAACTTTCCAAGGAAGAGGGATCACTATGAAGGCAATTTTGACAGTAATTGGTCATGATCACGTTGGTATCGTGGCTAAAGTTTCAACTAAGTTGGCTGAATTGAACGTTAATATTATTGATATTTCGCAAACTTTGATGCACGAGAATTTTACAATGATGATGATGGTAACGCTCGATAACTCAACTCAATTTGACACGGTACAACAAGAGTTAGCTGGTCTTGGTCAAGAAACCGGTTTGGATATTCGCATTCAACGTCAAGAAATTTTCGATGCGATTCAAAAACTTTAGGGGGATCAATGATGGAAACTAATTCGATTTTAGAAACAATCCAGATGGTCTCTGAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACCTTAAAGAATCTAGAAATAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //