Array 1 242054-241353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLL01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWV3 isolate EWV3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242053 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241992 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 241931 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241870 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241809 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241748 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241687 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241626 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241565 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241504 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241443 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241382 29 96.6 0 A............................ | A [241355] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 259251-258186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLL01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWV3 isolate EWV3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259250 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 259189 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 259128 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 259067 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259006 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 258945 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 258884 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 258823 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGAT 258762 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 258701 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 258640 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 258579 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 258518 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 258457 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 258396 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258335 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258274 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258213 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAAT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1433-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLL01000047.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWV3 isolate EWV3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1432 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 1371 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 1310 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 1249 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 1188 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 1127 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 1066 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 1005 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 944 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 883 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 822 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 761 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 700 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 639 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 578 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 517 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 456 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 395 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 334 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 273 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 212 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 151 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 90 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //