Array 1 298143-300236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGG01000011.1 Clostridium tetani strain C2 CtetC2_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 298143 30 96.7 35 .....T........................ CTTTCAAGCACTTTCTCTAATTCATCATCACATAT 298208 30 100.0 36 .............................. AAGAACTATTAAAGAAGTAAATATTATAGATGCTAA 298274 30 100.0 35 .............................. TGAAAATCCCATCTGTCTAACTCCAATGGGTCGAC 298339 30 100.0 36 .............................. ATATACTCAAGAAGAACTAGAAATAGAATTTTATAA 298405 30 100.0 36 .............................. CTAATATACCCTTTAACCTACTATCTTTATTAATTT 298471 30 100.0 38 .............................. TAAACAGGATGTAAAAGAAGAAAATATTGAGTTAGATA 298539 30 100.0 37 .............................. GCTATAGATGGTATAGCATATACTGCCAATATTAATT 298606 30 100.0 36 .............................. CCATTCTCGCAACGTATCTACTATACTAGCTATAGC 298672 30 100.0 37 .............................. TTAAAGTATTATGAGGAGAAATTGGGAGATGTAACAC 298739 30 100.0 38 .............................. AAAATTATTTTAATACTAGGTCTGAAAGTGTTAGTAAG 298807 30 100.0 38 .............................. CATTTTATTATTCCTAATGCTTTATTGCCTCTTTCCAG 298875 30 100.0 38 .............................. TTAAGTAGTTCTTTTTTGGGTATGCTGGGCGTACTAGG 298943 30 100.0 36 .............................. CGGAAGATGGCAGTACAAAGGAATTGCTAATGAAAA 299009 30 100.0 37 .............................. GGTATTCGGACATATAGAAGGCGTAAATAACGCACTT 299076 30 100.0 36 .............................. GGATTGGAAGAATGTAAAAAATAAACCAGATTTAAA 299142 30 100.0 35 .............................. GAGCACAAAATGGTATGTTATTATTTGACTTCATT 299207 30 100.0 36 .............................. TTCTATATCCACTAACTATAATCTTGTATTCTGTAT 299273 30 100.0 36 .............................. ATTGCTATTATTGGTTGTAGAATTACTTACATTACC 299339 30 100.0 36 .............................. CCAAAGCCATATATCCAAGTGCGTTGGCTGCATCTT 299405 30 100.0 35 .............................. GAATTTAGAACTTTATCTTTTTTAAGAGTTAAAGC 299470 30 100.0 36 .............................. GGGCGTGTTACTGTGCCTTTATAATATACTTCAAAA 299536 30 100.0 36 .............................. TAAAGAATTAAAAGCTAGCGGTGATACTGTGCAGTT 299602 30 100.0 36 .............................. GGAAGGTGGTAATTTTATATCCTTTAATGATGTGGG TATGG [299620] 299673 30 100.0 39 .............................. TATATATCTAAGTGGAGTCCTTTCCATGGAGCATTGTAT 299742 30 100.0 37 .............................. GGTAAGTTGGTTATAAGGGCTTAGGAAACTAGGCTCT 299809 30 100.0 35 .............................. GCATAAAGAAAGATAGCTTTAACAGTTACGAACAA 299874 30 100.0 37 .............................. GAAAAACCTACAGTGCAAGAAGGAAGTAATATATTTA 299941 30 100.0 38 .............................. ATTATTAGGCGTTGGGGTAGCAGCTAGTAAAATTGGAA 300009 30 100.0 36 .............................. CAGTTCCTTGGATAAAATTAGAATTATTCTTATAGC 300075 30 100.0 36 .............................. TCCTTTTTCAGTAGTTAATGGAGATAGAGGAATGCT 300141 30 100.0 36 .............................. CACCATTCTTACCTTAAATTTAGTACCTTCATTTAA 300207 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 32 30 99.9 36 ATTTACATTCCAATATGGTGCTACTAATAC # Left flank : TAACCCTAGTAAAGCAATGCCAAGCTTTATCTGTTCGTTATCATTACTTTCGGTGACAAATTTTTTTCCTACCTCTATGACCTTTTTCCTACTTAACAAGCTTTCCTTAATTTGCATTTCAAGTATTCTACAAAACTCAAAATAATATACTATTATTGGAAACTCATGAATATACTCTATTAAATCATTATATTGAGCTTCATCATTTAAATAATTTGATATAAGCTTAATTAAATTATTGCTATTTTCAATTTCAAATTTTTCCGTTCCGCATTTCGCATTAAAAATAAAATATGCATCTTTCTTTCCCGCTTCATCAAAATCCTGTGGCAAATAAACACTATCGGGATTCTCCTTAACAAATTTTAATATTCTATTATATATTGTTTCATTAAAATCCATATCATACCTCATCAAGTAAATTATGTTTTTATTATATCATACTTTTGAAAAATTCATTAACCGTCCCTATTTACCTATTTATACTATAGTTACAGTCA # Right flank : CGCGTTCATCTATGATGCACTATATGTCTATAGTATAACTTCTATTTCTGTCTACCTACTAAGTTGGGATTTCTTATAGTCTATTATTATAATACAAGTTATGTTAAATAATTTATAAACCATTAATATAACTATAATTGTCTACTCCCTTATATTTTAACATCATCTTAGGTAGACAATCAAATAAAGTTACTGGTTCTATCTTCTTTTTTACCCCACATATCTTTAGTTAACCATCTTTTATTTCTACTTTTGAATAATATTACAGAATCTTTATCTTTTCTTATTATATCATCTAATTCATATTTTAGTTTAATTATTTGTGACTCTGCTAATTCTCCTTCAAATACTGAGTTTTGAATATGGGACAAATATTTTTTACATACCTTAAAAGTTCTATTTAAAACTCTCTGCCCCTCCTCACCACTTTTTATATCATAAACTAATATAACATACATTTAAATCTCTCCTACCACCATATTTTAAATGGTTCATATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTGCTACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 522434-522786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGG01000012.1 Clostridium tetani strain C2 CtetC2_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 522434 30 100.0 36 .............................. TCATTCATAGCATTGTTAGCAAATTGTGTAGCATTC 522500 30 100.0 34 .............................. TTTATCTTACCCCCAAATATAATCTTTAGTCGAT 522564 30 100.0 34 .............................. ATGTTTTCACTATATTACCACTTCCTTTTATTTT 522628 30 100.0 34 .............................. GCAAATTCTATTATTTTAAGTGATTTCTCTATAT 522692 30 100.0 35 .............................. AAAGGAATGTAATTTAAGTTCTAGAAGTGCAGCAC 522757 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAATTATTATGAAGGGTATAGTGGAACATTTTATCCAAGAGAGTATTATAATAGTGGAAAACTACTTGTTAAACAAGTTGAAACTTATCAAAGTAGAAGACTAGAAGTTGCAAAAAGTATAGTGGAGGCTATTGGAGGTAATATATACGAGCTGTTATATCATTATTATAAACATGATAAAAAATCATAGCAAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGATTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAAACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTNNACAAGAGTTGTATTTAAATCTTTGTAACTACAATTGCTGTAACTATGTTTGATGC # Right flank : ATATACATTAAAAAACCTTAGCCATGTCGTTTAAACCCATGATTATTCTGTTTAAACATCTTATTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTCATAAAAAATTGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 524761-524988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGG01000012.1 Clostridium tetani strain C2 CtetC2_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 524761 30 100.0 35 .............................. GTGTTAACCCATACTCTACCTTCATTTCCACTTAT 524826 30 100.0 36 .............................. CAAATAAGGTAAAATCTTTGGTTATTTGTGGTTAAT 524892 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 524959 29 86.7 0 ...A............T.-..........A | T [524973] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGGGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAAAAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGGGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATTGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTCTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAATGATGGATAAAAATGAAGAAAAAATTAAAATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGATATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 534290-534579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGG01000012.1 Clostridium tetani strain C2 CtetC2_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 534290 30 100.0 34 .............................. TAGAAATATTTATAAGCTTCCTTTAAATCTCCAA 534354 30 100.0 34 .............................. CCTAAAAGAGATTATATAAAAAAGTGCAACTCTT 534418 30 100.0 36 .............................. CAACATGAAATTATTGTGAAGTAGGAATTTGATGTT 534484 30 100.0 36 .............................. TTAGATTTTTTATTTATATTTAAAGAAAGTGCATCC 534550 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAATTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGTGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 536701-536862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGG01000012.1 Clostridium tetani strain C2 CtetC2_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 536701 30 100.0 38 .............................. TCTAAATCTGGTAGATGGTTTTGAGGTAAGTTTTGTAC 536769 30 100.0 34 .............................. ACAATGAATAAAAAAGAATTAGTAGAAGCTTTAA 536833 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGTTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTAAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGAAATGTAAGGAAAAATATGGTATAATGGCATTACCATAAATTTGTGGGAGTGATATTTTATGAATATCTTAACAAATTGTATTATTGGTTTTATTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATAAAAAATAAAGACACATGGTATGAGGGGAATCGTTTCTGCGGGACAATACTTTTAATAAGTAGTATTATTTTTATACCATTTTCAATATTAATAAAATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATGTTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 541012-541432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGG01000012.1 Clostridium tetani strain C2 CtetC2_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 541012 30 100.0 36 .............................. TCCTTTGAATATCTTTGAAATATGGCTATTGCATAT 541078 30 100.0 35 .............................. ACTAAATCCACATCTTTGTATTTATCTTGTAGCTC 541143 30 100.0 37 .............................. AAATATATATGAGCATAGCTCAAAAGGAGAATTAATA 541210 30 100.0 35 .............................. TTTTGTAAGCATTCATTATCGTTGTTAAAACATCT 541275 30 100.0 34 .............................. GAAGTTTGCCGACCTAGATTGATACGGAACACAC 541339 30 100.0 34 .............................. ATTGCTGTAAGAGAATATATTTTATCTGGATTAA 541403 29 90.0 0 ................-.A...T....... | T [541417] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATAGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAATCATTTTGAGAATATACATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTTTATTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCTCATATGCCACACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGCGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 543284-543901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRGG01000012.1 Clostridium tetani strain C2 CtetC2_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 543284 30 100.0 36 .............................. TGAAAAACAGTAACATGAGTGTATTCATGTTACTGT 543350 30 100.0 34 .............................. AAATACGGAACTATTGTAGTTCTACAATTAGGGT 543414 30 100.0 36 .............................. TTAAGATTTACTTCATTTCCCCAACAGTCCCAACCT 543480 30 100.0 35 .............................. GTTATGCTGCAACTATGTGCTATGGTTGCAAGAAA 543545 30 100.0 36 .............................. TTTATATTTGGATTAACAGTTGTTAATTTAGCACCA 543611 30 100.0 34 .............................. TAATATTTAAGTTTTTCTCGAACCTCTGCAAAAC 543675 30 100.0 34 .............................. AAAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 543739 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 543805 30 100.0 37 .............................. AAGATAATGAATACCAACCAGAAGAAGCAGCAAAAAC 543872 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTATTGGACTCTAAAAAAGACGATGAAATAACAATAATTAATAACTCTAAAATAGATGAGGGCAAATTCTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAAGGATGCTATCTTGTTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGCATAGATCTTAATTACAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATCTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //