Array 1 288-1504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXEZ01000061.1 Xanthomonas oryzae pv. oryzae strain DXO-174 contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 288 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 355 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 421 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 488 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 554 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 622 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 687 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 752 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 817 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 883 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 948 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 1014 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 1080 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 1147 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 1212 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 1277 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 1344 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 1409 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 1474 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 19 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CTGATGCGCTGCGCGTGATCGGGCTGGTACCGCGCAGCGTGCTGATTGCGGCGCAGCTCACGACTGATCGTGCTGGGCGCACGCGCCAATACATCGGCGATGGCGCGCATCGACATCCCGGTTTCATATAACGCATGCAGACGGTATCGTTCCGACAGGTCCAGGCGGCTGGATGACATAGGCAACTCCACTTGGCAATGAAGTCGCTCAGGTCAGGTCGCCTGGACCACTTCACAAGCGTTGGTGTTGCGAATCAGAGTTGAAGCCGCCGCCTAAATCTAGGCACAG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCACGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8287-12849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXEZ01000060.1 Xanthomonas oryzae pv. oryzae strain DXO-174 contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8287 31 100.0 34 ............................... AGCTCACGCACGTAATCGTCTATGGGCTGTGAGA 8352 31 100.0 34 ............................... TCAAGATTGCAGATTATCCAGTAGAGGTTCGAGA 8417 31 100.0 35 ............................... TGCGATTTTCGCGGCAGGAAGTATGCAATGGGCTC 8483 31 100.0 36 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGAAG 8550 31 100.0 33 ............................... TAGAGCAACCAACCAACTAGAGGTATGTGTCAT 8614 31 100.0 33 ............................... TAAGATACAACATCGCCCAGCGCACAACGGGCG 8678 31 100.0 34 ............................... CGACGTTGTCCGGACTATGACATACGAGTCAGCG 8743 31 100.0 35 ............................... CCCTTTGGCAGGTATGTAACCTCACATGGGCGGAG 8809 31 100.0 35 ............................... ATCCGTGCAACGCTCTGAGCGCGTCTCTACGGGCT 8875 31 100.0 34 ............................... ATACACTGCTGCTCGATGGGCCCAACAGCACACA 8940 31 100.0 34 ............................... CACCAGGCTTCACCATGGCATTCGACGCTTCTAC 9005 31 100.0 34 ............................... ATTTGCAAAGAAGGTCAGCGGGTCTGTAGAAGCA 9070 31 100.0 35 ............................... ACGGCAAAGTAGTTGCGACCCTCTGCCAATGTATT 9136 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCGAGGGCGCGTGTAGA 9202 31 100.0 34 ............................... TGCCCGCTGATCTGCCTAGTGACATATACGCCAT 9267 31 100.0 34 ............................... CATGACCTTCTGTAGGTCGAGCGTCCCTGGTGCG 9332 31 100.0 36 ............................... CCACACCACGTCGCCGGGCAAGTTCGAGAAGGTGGG 9399 31 100.0 34 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGC 9464 31 100.0 35 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATG 9530 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 9597 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 9663 31 100.0 35 ............................... CTGCGCAGCACAACAAGTGCATTGCGGTCAGAGGT 9729 31 100.0 35 ............................... GTTGCCCGACTGACTGACGCCCAAGGTCTGGCCGA 9795 31 100.0 37 ............................... ATGAGCGCGCATGCGCAGATCAGCAAGCAATGCAAGC 9863 31 100.0 34 ............................... ACAGTAGCAGCAGAGTGGGTGAGACTTGAGGAAC 9928 31 100.0 34 ............................... CGGCTTACAACCCCAAGCTGGGGGCGGGCGTCCT 9993 31 100.0 36 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAAA 10060 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 10125 31 100.0 35 ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 10191 31 100.0 35 ............................... TGGCCCGTGTGTTGCGGAGGATACGTTTTTCCTCC 10257 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 10321 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 10388 31 100.0 35 ............................... ATGTAGCTGGCAAGCTGCGGAGCATCGCTCAGGAT 10454 31 100.0 34 ............................... TCGGCCACGCTGGCGCTGTCGTTGAACGTCATGT 10519 31 100.0 36 ............................... GAGCGTTGGAATCCTATGGTAATACCCCTCCACAGC 10586 31 100.0 34 ............................... GCCAACTCAATCGCCGCCCAGTCAATCGGGTTGA 10651 31 100.0 33 ............................... AGCATCTTCCTTTACCTTCAGGCCGCGGATCAG 10715 31 100.0 35 ............................... TTCCGCCACGATACTGCGTATGTCTGGACACCATC 10781 31 100.0 34 ............................... ACAAGCTGGCTGTAATAGCTGCTTCGCGCAGCAC 10846 31 100.0 34 ............................... GGGAGGGTTATATCCCTCCCAGCATCTCGCCCAC 10911 31 100.0 34 ............................... AGGGTCGATTTGGCGGGCCTGCTCTTGCTGCGCA 10976 31 100.0 37 ............................... CGCCATACAGGGGCGCTACATCATCCATGCTTGCAAT 11044 31 100.0 34 ............................... ACAGTGACCTTGCCTTGATGCGCAATCAGCTGGT 11109 31 100.0 36 ............................... TCAGGCATTCCGCCCTCTTGCCAATAAATAGGCACA 11176 31 100.0 34 ............................... TCGGCATCCCGAAGAACAAGCTGAGGCTAGAGGG 11241 31 100.0 35 ............................... CAAGAAGTTTACCTGGGCGAATGCCTGCTCGTTAC 11307 31 100.0 37 ............................... TCGACGAGCGTGCAGGCCTTGGCAATTCCTTGATGAG 11375 31 100.0 35 ............................... CAAATCTGCTGCCGGGGAATGTCAATCATCTGACC 11441 31 100.0 34 ............................... CAGCGCAATATGGTGACGGTCTTGGCGGAAGAGC 11506 31 100.0 35 ............................... AGCTCAGCCTCAACAGTGTACAGCAGGGCAGCATT 11572 31 100.0 33 ............................... CCATTCTGGTCGCGGGAATTACTCTCGTTCTCC 11636 31 100.0 34 ............................... TTACGTACGCCAGTGGGAAGAAGGCTGGGCAGGT 11701 31 100.0 35 ............................... CGATTGGGGAATCGACCGCTAGCATAGTCCATCCC 11767 31 100.0 33 ............................... AAGGATGACGAGGGTAAGGATCGGGAATACACC 11831 31 100.0 35 ............................... GAGCTATACAACACCTCGAAGACACGCAAAGCGGT 11897 31 100.0 35 ............................... CCATCGTGCGGTGTGCATTGGCATTCTCCCGATCG 11963 31 100.0 35 ............................... AGCCGACATATGACGTGAGCGCGGCGAGTGCTTTG 12029 31 100.0 35 ............................... CCCGTCGCGGCAGCGGATCCATTCAGCGTCGCGCC 12095 31 100.0 35 ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 12161 31 100.0 34 ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 12226 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 12291 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 12357 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 12423 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 12490 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 12558 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 12623 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 12689 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 12754 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 12819 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 70 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CCCTTGGTGCCTATTGTGCCGGCGAATTCAACTCTGATTCGCAACGCTGTTGAGGACCTCCTCGGAGAAGACTTCGAGGGGCGTTTTGAATCCAAGTATCTTGCGCGGACGATTGTAGAGCCGCTGCTCGATCCATCGCAGGTGCGCATCGGTGATGGTGCTGACATCGGTCTGTCGTGGCAGGTATTGGCGTGTCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //