Array 1 361813-363427 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIDY01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1793 1793_1_length_542874_cov_18.7976, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361813 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361874 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361935 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361996 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362057 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 362118 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362179 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362240 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362301 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362362 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362423 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362484 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362545 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362606 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362667 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362728 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362789 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362850 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362912 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362973 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 363034 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363095 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363156 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363217 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363278 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363339 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363400 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379560-381036 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIDY01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1793 1793_1_length_542874_cov_18.7976, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379560 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379621 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379683 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379744 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379805 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379866 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379927 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379988 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380049 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380110 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380171 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380232 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380293 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380355 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380458 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380519 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380580 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380641 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380702 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380763 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380824 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380885 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380946 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381007 29 96.6 0 A............................ | A [381033] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //