Array 1 61066-62054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEVFX010000034.1 Pseudomonas aeruginosa strain MS6000 NODE_10_length_209818_cov_13.463973, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61066 28 100.0 33 ............................ ACGTTGCCCCCATCCTGACCATCAACGGAGCAA 61127 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 61187 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 61247 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 61307 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 61367 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 61427 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 61487 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 61547 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 61607 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 61667 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 61727 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 61787 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 61847 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 61907 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 61967 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 62027 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 71566-70578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEVFX010000034.1 Pseudomonas aeruginosa strain MS6000 NODE_10_length_209818_cov_13.463973, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71565 28 100.0 32 ............................ AGATTCGTCCGCCCCAGCCGGCCAAGCTGAGA 71505 28 100.0 32 ............................ GACAGAAAGCGATCTGGATTCCGACCCATGCC 71445 28 100.0 32 ............................ CCACCGAAGAACCCTTCGAAGGCGCCCATGTC 71385 28 100.0 32 ............................ AATCACTTCAGTATCCAGGCCGTACCATTGCT 71325 28 100.0 32 ............................ GTCAGACGGGACAGATCAGCATCCGGCTCCTG 71265 28 100.0 32 ............................ TGCCGGCGGGAAGGTTGCCGGCTTCCCTGGCA 71205 28 100.0 32 ............................ TGGGCGCTGGCGATCGATGTTGATTGCGAGCC 71145 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 71085 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 71025 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 70965 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 70905 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 70845 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 70785 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 70725 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 70665 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 70605 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCAACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGCGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //