Array 1 107219-106414 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQQA01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 240 NODE_5_length_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107218 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107157 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107096 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107035 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106974 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106912 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106809 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106748 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106687 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106626 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106565 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106504 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106443 29 96.6 0 A............................ | A [106416] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125577-123351 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQQA01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 240 NODE_5_length_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125576 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125515 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125454 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125393 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125332 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125271 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125210 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125149 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125088 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125027 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 124966 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124905 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124844 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124783 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124722 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124661 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124600 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124539 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124478 29 100.0 32 ............................. TGTGGCTGGTCTATACCGGCAACGAACGCGAC 124417 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124356 29 96.6 33 A............................ GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124294 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124233 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124172 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124111 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124050 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123989 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 123928 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 123866 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 123805 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123744 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123683 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123622 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123561 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123500 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123439 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123378 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //