Array 1 54-876 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJT02000093.1 Pectobacterium aquaticum strain A105-S21-F16 Pectobacterium_aquaticum_A105-S21-F16_contig_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54 29 100.0 32 ............................. ATTTGGATGAGCTATTGGCGCATCCAGGTGCG 115 29 100.0 33 ............................. ATATCCCGGTATAATTCCTTGACCAGTATCTCC 177 29 100.0 32 ............................. CGCAAAGTTGAACGCGATACCAGCCGACACCA 238 29 100.0 32 ............................. GGTAAAACCGCCCCGCGTATCACTCCACAGCA 299 29 96.6 32 ...............T............. TGGGCAAAAATCGACACGGGCGCACGTATCGA 360 29 100.0 32 ............................. GCTTGGAAAGATGTTATTGCATCTCCGCAATA 421 29 100.0 32 ............................. ACTCATTTAGAGGTGGTGAGTGAAGTATGATA 482 29 100.0 32 ............................. CTGGTCTGTAGTGCGCTTCCTGCGCCACCACG 543 29 100.0 32 ............................. CGCAGAGTGATTGACCCTCGTAGCCCACGCAA 604 29 100.0 32 ............................. TGAGTTGAGCGGTGCAGCGCTGAATTGGGCTG 665 29 100.0 32 ............................. ATTAGACGCTCTCATAGCAGAGCAAAGAAGCC 726 29 100.0 32 ............................. TGAAGCTACCGTGCGCCGGAATCAGGCTTATC 787 29 100.0 32 ............................. CCCTAGATCATTTTCAATGATGTCTACCAGAT 848 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGCCAGCGGGGATAAACCGCCAAACTCCCCTTATTCACAGCGGGTATTGATG # Right flank : GTCTTGCAGGAGTGGCCACATCTTATCGTTCTGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 305858-305166 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJT02000007.1 Pectobacterium aquaticum strain A105-S21-F16 Pectobacterium_aquaticum_A105-S21-F16_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 305857 28 96.4 32 T........................... GTGGAATGTGGCCCTGGGATCGCCCGGCCTGA GA,T [305850,305853] 305794 28 100.0 32 ............................ AGAACAGGATTTGCTGTTGTAGTGCGGACGGC 305734 28 100.0 32 ............................ GGTAGTGAATGTGTGTTTCGTTTCGATGAATT 305674 28 100.0 32 ............................ AGCCCCCGGAGCTCCACTGCCAATGCGCTGGC 305614 28 100.0 32 ............................ TGACTTGTTACCCTGTTTGTTACCTTGCGTGT 305554 28 100.0 32 ............................ TGATTTTTATCACGTCATATAGCGATCTGGGC 305494 28 100.0 32 ............................ TTCACAAGGTATCACTAAGAGCGCCCGCCAAG 305434 28 100.0 32 ............................ TGCCGAGCATCGATACTACAGTCTGACACGCT 305374 28 100.0 32 ............................ ACACACAAATACACCGCATTTGGTGACCGAGG 305314 28 100.0 33 ............................ CGTAACCTGTGACATCAACCCGTTTAACCCCGC 305253 28 78.6 32 ......................CGCTTT GCTTGATATGCGCTATGCACTGGGTGAAGAAC 305193 28 78.6 0 ......................CGCTTT | ========== ====== ====== ====== ============================ ================================= ================== 12 28 96.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTTGATATGCGAATCTGGCTGAACTGGCGAGAAATAAACGAGTCATGACGCAAATGCGTTGTAATGGTGTTTTTCAATATAAGTACCGATGACTTTTCATGTATTTCAAATGAGCGTGAAAAGCAGGTTGTTTTCCTCGCCAGACGTTTAATATGAATTCGTAAATGAAGGTTATGCCGCTCAATTCTCTGCGTGAATAGCTTACCTGTCAGGTGTTTTTCTGACTCGGTTTCTCGTGCGTAACGCCCCCAATCATCGGTGGTGAAAAACCATATTGTTGACAGTAGTATCGGGGAAATCCTGCCTTTCCTATACCATACTTACGGACGGGTTCTGTTTGCTGGCAATGTCGGCAGGCAACGTTGATCGTGGCTGGCATAAATGCGTGACCTCAAAAGAGAATACCTTATGAAAATAACGCTTTTAAGTCATTACCACTTTCTAAGCTGCCGGATAGGCAGTGAACGCAATAACCTGTCGATCATTGCCACGCCGATC # Right flank : TTATCGGGATACGTCACTGGCGCGACGCATTTCGTGGCGTTATTCCCCATTGAGCGTGACAACCAGTGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAGCCCGACCTTTATCTGGCGCAATGCGACAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTCGCTTT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36353-36869 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJT02000020.1 Pectobacterium aquaticum strain A105-S21-F16 Pectobacterium_aquaticum_A105-S21-F16_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36353 29 100.0 32 ............................. TTCGCGGGGCTGTATTTACTGCGTGATGAGAA 36414 29 100.0 32 ............................. ACTGCATGATTATTGCTGTCAACAATGCATAT 36475 29 100.0 32 ............................. TTGTCGGATCGGGTAGTACAGGGACGAACATT 36536 29 100.0 32 ............................. GCGACAAACTGACCTATGTGTACAATTGTGTT 36597 29 100.0 32 ............................. GTATCCCATAACGATCAGTTCGCGCATCGTCG 36658 29 100.0 32 ............................. GGTAATGTTTTCCATCATTGCTCCCGTGATAA 36719 29 100.0 32 ............................. CGGACTGATTCGTCAATCTGTACGTGATGAAA 36780 29 100.0 32 ............................. CACTGGTACGCTGTCGCAGGACAAAATAGACA 36841 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1373 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJT02000027.1 Pectobacterium aquaticum strain A105-S21-F16 Pectobacterium_aquaticum_A105-S21-F16_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 33 ............................. CATCACTGGGACGGTTTAACGGAGATGGTTTCC 63 29 100.0 32 ............................. TGGAGCTATCTCGAAAGGGATGGCCTTTTACT 124 29 100.0 32 ............................. GATGTCGATTAACCGCGTATCAGGATTCGGTT 185 29 100.0 32 ............................. TGAGTTATTTCGGATTTGACGACGAAACAGGG 246 29 100.0 32 ............................. GTCTGCACCCGACATAATGACTGCGCCATCAG 307 29 100.0 32 ............................. CCAGTCGAATCATCGGTGTGTAATCGCTGCTG 368 29 100.0 32 ............................. GAACAGCAACTGGCCGCCAGCGAACTGGCCTC 429 29 100.0 32 ............................. GGTGAGGTGGACGAGAGCGCTACGCTACAGAC 490 29 100.0 32 ............................. CGCACTACTTCTTCGTGGTTCCCTTACTGTCC 551 29 100.0 32 ............................. AGACAATTCCCCGTTAGCTGTTTTTATTGAAA 612 29 100.0 32 ............................. AAACATTCAGGGCTGGTTTTTCGCCCGTCCAA 673 29 100.0 32 ............................. GCGCTGAACGCAGATGGTACATGGAAGAAAAA 734 29 100.0 32 ............................. GTAACAACCCGAACGCTACGGCGATCACCGGT 795 29 100.0 32 ............................. GCGCTGTGGTTGTTGACATTCCGTCTATGACG 856 29 100.0 33 ............................. TGGCAGGGTAGCGTTGAGGACGGCATAGCCTGC 918 29 100.0 32 ............................. CGTGATAACGCCAATCGCCTGTTAGTGAACAC 979 29 100.0 32 ............................. CCTGCATCAAATCGCAGGCTATCTGCTGAAAT 1040 29 100.0 32 ............................. CAGACAGAACGGGTTATGACCGGTGACGTTCG 1101 29 100.0 32 ............................. GGGTATGATGGCTTTCTCACGGCTCTCTCTGT 1162 29 100.0 32 ............................. CGGCATTTCGAGCGCCGAACGCAGGCCGGGGA 1223 29 100.0 32 ............................. TAGCGCAATGCGCCAGTGGCGGTGCATCTGAA 1284 29 100.0 32 ............................. CTGCCAATTAATAATCCCGAACTAATGAAACC 1345 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GAGTAGTAGAGATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGTACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTGGATAGGATGAAATACCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTTGGAGGCAGCACCTCTCGTAAGGATTATGAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //