Array 1 107920-106138 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLE01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008074 CFSAN008074_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107919 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107858 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107797 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107736 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107675 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107613 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107552 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107491 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107430 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107369 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107308 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107247 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107186 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107125 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107064 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107003 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106942 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106881 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106819 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106716 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106655 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106594 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106533 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106472 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106411 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106350 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106289 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106228 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106167 29 96.6 0 A............................ | A [106140] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125545-124052 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLE01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008074 CFSAN008074_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125544 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125483 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125422 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125361 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125300 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125239 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125178 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125117 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125056 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124995 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124934 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124873 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124812 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124751 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124690 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124629 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124567 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124506 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124445 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124384 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124323 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124262 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124201 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124140 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124079 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //