Array 1 428675-429374 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIJQ01000001.1 Klebsiella pneumoniae strain TUM14089 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 428675 28 96.4 33 .............A.............. CCAATGGCGTTAAGCCAGGCATGGTTATCACCG 428736 28 96.4 33 .............A.............. TCATACTGATATCATTCTTTGCTACTCTTTTCG 428797 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 428858 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 428919 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 428980 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 429041 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 429102 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 429163 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 429224 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [429229] 429286 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 429347 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 438128-440229 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIJQ01000001.1 Klebsiella pneumoniae strain TUM14089 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 438128 28 100.0 33 ............................ CGTAACTTTGTTTTTCTCATCCACGCTGAAGTG 438189 28 100.0 33 ............................ TGATACAAATCCAAAAAATCCACGATGATTACT 438250 28 100.0 33 ............................ TCTTCCACCACATCTCAAAAAGGTTTTTTGCCA 438311 28 100.0 33 ............................ TAGCGGATCAAACAAAACATTCAAACCGGAATC 438372 28 100.0 33 ............................ CAGTATCATACTGGCTGTTTATCAGAGCTGACG 438433 28 100.0 33 ............................ CCCAAGGCGGCAAGTTGACCACCCGCCGTCCGA 438494 28 100.0 33 ............................ TCCGTGATGCGGATTGGTTGCGTTATCGCTGCA 438555 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 438616 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 438677 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 438738 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 438799 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 438860 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 438921 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 438982 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 439043 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 439104 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 439165 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 439226 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 439287 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 439348 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 439409 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 439470 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 439531 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 439592 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 439653 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 439714 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 439775 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 439836 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 439897 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 439958 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 440019 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 440080 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 440141 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 440202 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //