Array 1 210316-208576 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJP01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain 163585 contig03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210315 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210254 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 210193 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 210132 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 210071 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 210010 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 209949 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 209888 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 209827 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 209766 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 209705 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 209644 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 209583 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 209522 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 209461 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 209400 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 209339 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 209278 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 209216 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 209154 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 209093 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 209032 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 208971 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 208910 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 208849 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 208788 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 208727 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208666 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208605 29 100.0 0 ............................. | A [208578] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228855-226997 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJP01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain 163585 contig03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228854 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 228793 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 228732 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 228671 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 228610 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 228549 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 228488 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 228427 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 228366 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 228305 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 228244 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 228183 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228122 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 228061 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 228000 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 227939 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 227878 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 227817 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 227756 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 227695 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 227634 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227573 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227512 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227451 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227390 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227329 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227268 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227207 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 227146 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227085 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 227024 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //