Array 1 1028578-1024201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034170.1 Nakamurella sp. s14-144 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 1028577 28 100.0 33 ............................ CACCTTCGGGCCGACCCGCGAGTCTGCGGAATG 1028516 28 100.0 33 ............................ CGAATCAGACGAGATCGGTGTACGCGACGAACG 1028455 28 100.0 33 ............................ CAACTACGTCAACAACCTCGGAGCCAGGCCCAC 1028394 28 100.0 33 ............................ CAACTTCGAAGAGGACTCGGGGTTCGTAGATGC 1028333 28 100.0 33 ............................ CCTCCACAGTCAACGCAACACCATCGCGGCCCA 1028272 28 100.0 33 ............................ CTCGGTCCCGGACCCGGTGGTGTCGGTCCCTGT 1028211 28 100.0 33 ............................ CTTCACCTGAGCCAGTCGATGGCGGCGGGGCGC 1028150 28 100.0 34 ............................ CACCGTTCTGCAACACATCAGCGGACACCCGCTG 1028088 28 100.0 33 ............................ CGCCCCGTGGCAGGGTGCCCGGTTCAAGGTTGG 1028027 28 100.0 33 ............................ CGGCGACGGCCGCCTCGACGCGGCGCAGCAAGT 1027966 28 100.0 33 ............................ CAAAAGCACGACGCCCATCACCACGGATAGCGA 1027905 28 100.0 33 ............................ CGTCGCCGGCCTATCCGGCGTGCCCACACCGCA 1027844 28 100.0 33 ............................ CCGCTTCCGGAGTCTCGTAGTCTCGCGGGTCAA 1027783 28 100.0 33 ............................ CGGTGGAACGCAAGGCAACCTACATCGCACAGG 1027722 28 100.0 33 ............................ CCACGCTCGCCGTTGGAGCCGCGACGATGGTCG 1027661 28 100.0 33 ............................ CCTCGGGGATCGCATGGTCGCATCTATTGATCC 1027600 28 100.0 33 ............................ CTCTCGACGTTCTCCGGGAAGCGCCACCTGTTG 1027539 28 100.0 34 ............................ CTGCGCTGGAACAGCCCTTCCGCAGAGCCGATCA 1027477 28 100.0 33 ............................ CTCCCCCAAACTCTCCGGACGACAACCACCATC 1027416 28 100.0 34 ............................ CGGCACGTTCGGGTCGGTGACGGTGAAAGAACTC 1027354 28 96.4 33 ............A............... CAGGTGTTGGTGGTCGGTGGTGAACTCATTTCA 1027293 28 100.0 33 ............................ CAAAGGAGGTTGCGCCTACCAGGACAACGGGAT 1027232 28 100.0 33 ............................ CTACAAGCTGCCGCACGACGACGAGATGGCCTT 1027171 28 100.0 33 ............................ CGCGACGTTCTCGGCTACACGTGCCGCCAGCCG 1027110 28 100.0 33 ............................ CGCTTCAGTCTGAGCAGACACTCACCATCTACC 1027049 28 100.0 33 ............................ CTGGTTGCCGTTGGCGTCGAATACGTCGTTGGG 1026988 28 100.0 33 ............................ CTCGGTCGGTCCAGCCGGACCTGTTGGCCGATA 1026927 28 100.0 33 ............................ CTGTTGGACCATCTGCATGAAGATGGCGTAGGG 1026866 28 100.0 33 ............................ CACCACATCGAAGAGGCCGTCTCCGAGGTTGCG 1026805 28 100.0 33 ............................ GCAGAAAGCAATCTCGCCAAACTCAACCGGCTC 1026744 28 100.0 33 ............................ CTCGATCGGTTGGCCCGGTCAGTCCCCGACGCC 1026683 28 100.0 33 ............................ CCCTGACCCCTCTACACCGGAGGGTGGCCCCGC 1026622 28 100.0 33 ............................ CGCCGGCTAAACCGTTGCAGCGCAACCTAACGA 1026561 28 100.0 33 ............................ CATCATGACAACCACCTAACGACGAGGGAAACA 1026500 28 100.0 33 ............................ CCGCACTTACGGCGCGGGCGGCGTGTCGGGTCT 1026439 28 100.0 33 ............................ CTCGCCCAGATCGACCGGCTGCCCGAACTTGTT 1026378 28 100.0 33 ............................ CGGTTGTGTGGTCGCCGTGGAACAGGTTGGCCT 1026317 28 100.0 34 ............................ ACACAAAAACGCGGCCCCACTTCGACGGGGAGTC 1026255 28 100.0 33 ............................ CCCATCACGTACCTCCAAGTCGGGGGCCGATGT 1026194 28 100.0 33 ............................ CGCTCGCCTGTCGCGGATCTCCCAGGCAACCCG 1026133 28 100.0 33 ............................ CCAGATTGGATGGATGAACTCATGGCCCGCGAA 1026072 28 100.0 33 ............................ CTCGACCGCCATCGCTGCATCTCTGGGCAAGGG 1026011 28 100.0 33 ............................ CGGCGCCCCACCCATGTCGCGGGTGGTGCGCCG 1025950 28 100.0 33 ............................ CACAAACCGTTTCCTTGGCGCCGCTGAGTTCGC 1025889 28 100.0 33 ............................ CAGTGCCTACTCGCCCGGTGCCCTGACGTTGCC 1025828 28 92.9 33 .......................TG... CCCCATCGAAGCATCCCGCAGCGAAAGCCGCCG 1025767 28 100.0 33 ............................ CAGCATCTTCGCCGAGTCCTGGCCCGGTCCGCC 1025706 28 100.0 34 ............................ CAACGGCTACAGCGAACATGCCGGGGTGGACGTC 1025644 28 100.0 33 ............................ TGCCGCGACGGAAAGACCGAAGCGAAGGAAACC 1025583 28 96.4 33 ..........T................. CTGCGGCGGCAGCTCAGACGACTGACTAACCGA 1025522 28 96.4 34 ..........T................. CTCGACACCCTCGGCCAGCCCAGAGATGGACTTA 1025460 28 100.0 33 ............................ CACGTTTGGCCCGACCCGCGAGTCTGCGGAGTG 1025399 28 100.0 33 ............................ CGAGGCCACGTCGTCGCAGCCCTAGAGCTGGCG 1025338 28 100.0 33 ............................ CGCTCGCCGCTCTTTCTCAACTCAATACCAGGA 1025277 28 100.0 33 ............................ CAAACGGGAGCAGGTGCGGCAGGCAGGTAATGC 1025216 28 96.4 33 ........T................... CCGTCAGCGACAATCGTTGCCAACGGGTCCGTG 1025155 28 100.0 33 ............................ CGACAGTGCTTTGGAGCTGGAACGGTTGCGGGC 1025094 28 100.0 47 ............................ CTGCGGATCCTCACCGAAGCTGACACCCCCACCATGTTCCCCGCACA 1025019 27 96.4 32 .................-.......... CCCGGTTGCGGACCTTCCCGGTGGCCCTCGTG 1024960 28 96.4 33 ........................C... CGGGCCAGCGCCGAATCCGGGCGGGGTGTCATC 1024899 28 100.0 33 ............................ CTGCGGAGTGGTGCTACTCAGGCAGTCGGCCGC 1024838 28 100.0 33 ............................ TACCCACACCGGGGCCACCCCGGCGGCGCCCAA 1024777 28 100.0 33 ............................ TGTGTAGTCCACAAACTTCCCGTCCCGATGATC 1024716 27 96.4 33 .................-.......... CGTTTCGGCCTGAGCGGCTGGCCCTGCCAGCTC 1024656 28 89.3 33 GC..................A....... CGTTTCGGCCTGAGCGGCTGGCCCTGCCAGCTC 1024595 28 89.3 33 GC...............A.......... CGCCTACAGTCAGCGCCGGAATGTGAAACTCCA 1024534 28 89.3 33 GC...............C.......... CGACGACGCCGCCAAGTCCGCCGACGTCGCCCT 1024473 28 96.4 33 G........................... CGGGCCCTCTTTGAGGCCGTCGTCCGTGCCTGC 1024412 28 92.9 33 G....................C...... TGCCGGTAGTCCCGACGGTGCCGACTCCGGTAA 1024351 28 89.3 33 ..C...A..........A.......... CCGCTGGACAGGCCAATTCGGTGTCACCACCGA 1024290 28 92.9 33 ......A.........T........... CTCTTGCTCGTCCGCTGCCGCGGTGATCGACGT 1024229 28 89.3 0 ........T........A..A....... | A [1024203] ========== ====== ====== ====== ============================ =============================================== ================== 72 28 98.6 33 ATGTTCCCCGCACACGCGGGGGTGATCC # Left flank : GACCCGAGCACCCGTCGCGCCGAGGCTGGGATCTTATTTCGCAGCGGACCAGGTGCTCGCGGCGTTGTGTTGGTGCAGTCGAAGGTGAAGCCGATCAACCTGCCATCAGGTGCGGCAGTGATCACCGACGGCGGCCTGGTAGCCGATGTCGGATCGGAGGTCACTTTCCAGATTGCGGTCAACGCGGTCATCAGCAAGTCCCGGTCCAACTTCCGAACCCCGGCAGCCGATCCGGTGGAATGGGCGAGGAAGAAGTTAGCGCCAGCCCTGTGGGTACAGGACGCCAAACTTGAAGACATCAAGATCACCACCTCGGCAATGTCCGGGGCGCTGGTAATTTCCAGCATCACGGGCATCGCCACGGTCACAAAGAGGGAAGCACTGGCTGACTTTGTGACAAACGGCGTGGGCCGAGCAAAAGCTTTTGGGGCTGGCCTTCTCACCATCCAAAAGTGATGCTAAAACTACACTAGGGCTGGTATCTTTGCAGATCAGGAAGC # Right flank : CCGTCAAGCATCGAGGAAAGGACAGGGCGAGATGTTCATCTCCTATTCGGCTGTAACCCCATCCCCCGGCGGGCCTTCGAACATGGATGGTGGGACGCTCCATTCTTCTGCGCTCGGGCCGATATGCGCTTGAGCGTGCATCTGCCTGCAGATCCTTCGCGAACCATCAACGAGTGCGGCAGTGCACTATTTGAGGAACCTAGCGTCTACTCCACCATCGCTTTCAGTGCCGCAACCGCCGCGGCTCCACCAAGCCCGGAAACTCCACCCCCACGCCGAGATCCCGCTCCCGCCAACAGGATTCGACTACTCCCTTCGACAGCAACACCCTGCTGCTGCGCCGGAGCGAACGCCTCTTCGTCGTCATCGAGGAATGGCCAGGACAGGTCGCCGTGAAAGATGTTGCCGCCCGGCATGTTCAACGATTTTTCCAGGTCGAGTGGGGTCGCAACATCCACGCACAGCAAACCCGTCTCGTCCCGGGCCAAACAATCTGCCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //