Array 1 5269209-5270783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009909.1 Paenibacillus polymyxa strain CF05 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 5269209 32 100.0 36 ................................ GATTTCCCATAAAACCTTTTGTTTAAGGTTAATGCC 5269277 32 100.0 34 ................................ TATTAAAAGAAACGGCCCTCTGATCGTGGGGATC 5269343 32 100.0 37 ................................ ACGTCCAACAGGACGATTATCAAAGCGTTTTGGAACG 5269412 32 100.0 37 ................................ TAGGCCTTGGTTTCTGTATTTTCAACGAACCGGAACA 5269481 32 100.0 33 ................................ TACCTAACTGGGAGAAGCATCAAAATGTAGATG 5269546 32 100.0 35 ................................ TTAATGAGTATCAAGCATTTACTGTTTGATGCGAC 5269613 32 100.0 36 ................................ ATAACACAAACAACAAAAGACTGGTCTTTAATAGAC 5269681 32 100.0 34 ................................ TACAGAATAAAGCGCAGGCAGGCGTTCAACTAAA 5269747 32 100.0 33 ................................ CAGTTTTCGATGGCTATTAGATCGCCCTCAAAA 5269812 32 100.0 33 ................................ TACGCTGGCCGTGAAGGGCTGTCACTGGCCGAG 5269877 32 100.0 35 ................................ AAGCCTAATGACGTGGTGTTGGCGGTTGTAGCTGA 5269944 32 100.0 34 ................................ TGGACGAAGATACGTTTGAAAAGTTACAAGCCTT 5270010 32 100.0 33 ................................ GTAATGTCCGTAGAAATGCCTGACGCGCGCGCA 5270075 32 100.0 36 ................................ AATTTATCTCCCTTGATTACAGGAAAAAAAATCCAA 5270143 32 100.0 35 ................................ CGTTTACGAGTCTCGTGGAGTCAGAACATTATAAC 5270210 32 100.0 34 ................................ ATGAGCGTATCCGTGGCCTTAATTGACTCGTTGA 5270276 32 100.0 37 ................................ TGCTGTACTTGTAGCAACTTGAGATTGTCTAATAATC 5270345 32 96.9 34 ............................G... CCGAAACAAAGGAAAAATACTCAAAATTCATTGA 5270411 32 100.0 35 ................................ TTTTACCAACTGACAAGGGTATCTCTCCTTTATAA 5270478 32 100.0 42 ................................ TCTCTTGTTGTTTGGTTTATTGCCAGGTGTACCAGGGTCGCG 5270552 32 100.0 36 ................................ TCTCTTGTTGTTTGGTTTATTGCCAGGTGTACCAGG 5270620 32 96.9 34 ....................A........... AACTAAATAAACAACAAAGGACTCCATACTGGTT 5270686 32 100.0 34 ................................ TAAAATTTTTGGAAAAGGGTAGGGGGCTCAAATT 5270752 32 93.8 0 .......................A...A.... | ========== ====== ====== ====== ================================ ========================================== ================== 24 32 99.5 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCAAGTTCCGTATTCGTGTCAATGTCATTTATCCAGGGGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTGAAGCAGATTACCATCCCTGTGCAATTTCCCGAGGGAGATCAGCCGTTGGCAGATGGACCGGGACAGCCCGAACAGGTTGCTGATTTGGTAACATTCTTGGCCTCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATGGAGTATTCTCTGGGACAGAGAAATGTTTTGTGGTATCTTAAGTGTATTCTTACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAGATGGATTTATATTCATTTTATCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTAAGCATCGTTATTTTCGAAATTATAAGGAATTAATACCGTTAGAGTATTAATTCCTGCATTTTCGCT # Right flank : TTATCTATAGTACCTAACTTGCATAAGAACTCCCAGCAGATTCTTCATGATTGTAGCCAAGACATAATTGATATTAAACTTTAGGAATATCGGTTTAGTTATCTTAAAAATATTATTTCCACATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGTTGAGAATCTAGTGTTTTTAGGCGAAATACAAACCTCTTCACATTAAACAACCATAAGTTCGTAAAATGAAACCTGAGATAGGATACGGAAACCAAAGGCTTTAAATTAAGTAGATAAAAGAGGAGTATGTAGCATATAACGCTACGACAATATATAAAGAATTGTCGATGAATTCACTTAACAACGCAAGTGTTTAAGTGGTTATTCTGGGCTTTGTCGATATTATCTTATGCATGGTCACACATTTAAAATATTTGTTCAATGGAGGTAAATAGATGAATTTATTAGCTATTCCTGGTCTGTATTTTTATATCTATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5279895-5281761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009909.1 Paenibacillus polymyxa strain CF05 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 5279895 33 100.0 36 ................................. CACCCGGAACGTACAACTGTCTTCTTGCACATTTCG 5279964 33 100.0 34 ................................. GTCGTTCGGCTCAGGATCTACTGGCCCCCAAATA 5280031 33 100.0 33 ................................. CAATACCGAAATGATAGGGGGTGGTCAACACGA 5280097 33 100.0 35 ................................. TTGTCATTCGGCGTAGCTTTCAGGTTTTTAATTAC 5280165 33 100.0 33 ................................. CTTATAAACAATGGACTATCAAAACTTTTGCTA 5280231 33 100.0 34 ................................. TACTGTATCCATGAGATAGATTCAATGGGAAAGT 5280298 33 100.0 37 ................................. CTGATCGTACGTGTAACTTGCCGGAAGCTCTGAGGGA 5280368 33 100.0 34 ................................. CGTCTGGCTGCTCAAATTTAACGATCTGAGAATG 5280435 33 100.0 35 ................................. GGACATCATCCCGGAGTAATACAAACAACCCCCGC 5280503 33 100.0 34 ................................. GACTTCGAAAATGCCCATTGCTGGCTGCTTACGA 5280570 33 100.0 35 ................................. TTGTTAAATAAAATAGTTGAGGAGGTTTTATGATG 5280638 33 100.0 33 ................................. AACATGTTGAAGAAGGGTCATTGTGTCGTTATG 5280704 33 100.0 33 ................................. CATGAAAAACCTTTCACGGCCTGTCGGTGCTCC 5280770 33 100.0 36 ................................. TTATGCTGAACAGGACTCATGGCGGTTAGATACTTA 5280839 33 100.0 34 ................................. TGCCCGTCTCAGGGCCTCTACAGCGGTTTCCTTA 5280906 33 100.0 37 ................................. CATCCCAAAATAACAGATTTGCTATCAACCCTTCGTG 5280976 33 100.0 35 ................................. TTTTACTTGGTCAGAAGGATAACCGTTTGTATATC 5281044 33 100.0 35 ................................. CGGTACCTACATACTTATCCGTACTCTTCCAATCG 5281112 33 100.0 38 ................................. CATCCCGTTCCCCCAGGTGGGGGTTATAGTTGGACGTC 5281183 33 100.0 36 ................................. TTCGCCAGTGCTGACACGGGTTGCAATGGCCTGTAG 5281252 33 100.0 34 ................................. AATGACATTGCCGCTATAAAAAGTTCCCGTTTTA 5281319 33 100.0 37 ................................. TTGAATCCTCTATCCAAGGTGAAGAATGTTCCGAAGC 5281389 33 100.0 34 ................................. GAGCATAACGGAACGTCCTACACGTTGCAATTCC 5281456 33 100.0 38 ................................. AACTTGTTGTACTCTTCTCTCGCCATCCGTTACACCTG 5281527 33 100.0 35 ................................. AAAGCCCCCTGCATGAGCTGTCCTGCATCCATTCT 5281595 33 100.0 35 ................................. ATCGACATGACGAATATAACAAGCATTAGTATATT 5281663 33 100.0 34 ................................. CGCTAGATGGTAAGAAAACTGCTTATGAATTTAC 5281730 32 87.9 0 ..........A...-.........A...A.... | ========== ====== ====== ====== ================================= ====================================== ================== 28 33 99.6 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGGCAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGCTTAAAATATGAACTTGAAGAATTGATAGACAAAACGGAAGACAGCTTGCGCTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTACGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAATTGAATCAGTTACCATCAGTAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGAAATTGATATCATTAGAGTATCAATTACTGCATTTTCGCT # Right flank : TATCTTTCATTGTGCCTCCTATCGGATAAGCTGGTTACGCTCCATGTGAGTGCATGGATGATATGAAAAAGAAGTCTCGTTTCGTGCCCCGCCCAGCAGTAAATAGTGCAAATTTCTTTTTAACGGATTCCTTTTTCGACAAATTCCCCCTTACTTTTATGCAATAATTAACTAACATTACTATGTTGAAGCATAAAATTAACTGGGGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAACGCTATGTAACGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCTTTAGGATATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAGCTTCGCATTATTAAAGCGCGAGAAATGAACTTATGTATCCCTTGATTGTATCAATATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTCCGCATGGGACCTCTATACCATTTGTTGGTGAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //