Array 1 3728-2037 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUJI01000028.1 Clostridium sp. AM29-11AC AM29-11AC.Scaf28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3727 32 100.0 33 ................................ TCAATTTACAGAACATGGAAGACGTGACAAGGA 3662 32 100.0 35 ................................ CAGTCCTGTGGGACATGTCAAAGGCGAGGACGGGA 3595 32 100.0 34 ................................ CACTGACTTCTCGCCTTCGTCTGTCTCCTTTTGA 3529 32 100.0 34 ................................ AATATGGAAATCTGTTTCTTCACTTCCTCGTGCT 3463 32 100.0 34 ................................ TCCACCCGGCCGGTTTCGTCGTCCAGAGGGCCGG 3397 32 100.0 34 ................................ CCCCTGCTGAGCCTGTTATTTGCCGCTATGGTGG 3331 32 100.0 35 ................................ CTCCAGATACACCCAGTGCTGTATTGGCAGCAGCA 3264 32 100.0 34 ................................ TGTTAATCGATCCATATGATCCTCCCTTCCCTGC 3198 32 100.0 34 ................................ TGAGGTATCATAGCTGGTATTCTTGGCTGAATCG 3132 32 100.0 35 ................................ GAGTGAGTACCCTCGATCAGGCTCGCGAGGGCTAC 3065 32 100.0 37 ................................ GGATCGGTAAATAAAATATTCGGTATCCGGCCCCGTA 2996 32 100.0 33 ................................ TTGGCCGAATCGCTCACATACGTATCATAAACC 2931 32 100.0 36 ................................ AGTATAGCGATATAATTGCACAGCCAGGACGGCACA 2863 32 100.0 35 ................................ TTACTGTACTGATCGGACTCTCAGCATTGTCGTTG 2796 32 100.0 34 ................................ ATTAAACACTGCCGCCATATCTTTTCCGCCATCC 2730 32 100.0 35 ................................ CTCTTTGATTGTTCATTTGCACGAAGCGGTTTACC 2663 32 100.0 34 ................................ GTTTCTTAACATGTCTCCTCCTCCATCCAAATGA 2597 32 100.0 33 ................................ TCCTGTGTAAAGCCCTTGATTTTCTGCTTTGCC 2532 32 100.0 34 ................................ CGGTAAAAGTCAAAAGCAATCCCCCACTGATGCT 2466 32 100.0 35 ................................ CAGAATGGATCCGTAACGGCATAATTTAACGCTTC 2399 32 100.0 33 ................................ TTTTATGGCGTCGATTGCCTCTGTGAGCGAATT 2334 32 90.6 35 ...........T.T.......A.......... CTTAATGCGAGGCGCAAAATGGGATGGAGGTTTTG 2267 32 90.6 34 ...........T.T.......A.......... ATTAAGTAAATACCATACAGTCACCAGCAGCCCG 2201 32 93.8 34 ...........T.T.................. ACATGTCCGTTTAGAAGCTCTTCATCACTGTTTT 2135 32 96.9 34 .....................C.......... CAGTGCCGATGATACTATTATAGCACATTTTCGC 2069 32 87.5 0 .........A...........CA.......G. | T [2058] ========== ====== ====== ====== ================================ ===================================== ================== 26 32 98.4 34 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Left flank : GAAAAAGTGAAAAAAACGTGGGAAGCCTTAAGGAGGGAGAATGCTTGTATTAATTACTTATGATGTCAACACAGAAACACCGGAGGGAAAAGCAAGACTGAGAAAAGTGGCAAAACAGTGCGTCAATTACGGAAGGAGAGTCCAGAACTCCGTATTTGAGTGCATTCTGGACAGCGCCCAGTGCGTAAAACTGAAATGTGAACTGGAAGAGCTGGTAGATAAGCAGACAGACAGCCTCCGTTTTTATTATCTGGGAAATAATTATAAAACCAAGGTAGAACATATTGGAGTAGAGAGGGGGACGCCCGCAGATTCTGTATTGATTTTCTAGTGCGAATAACAGTTACACATAAAATTCCCTGGAGATTCGCACCGAAAAAACTGCACAAAAAATTATGAAATGGACAGGATAGAGGGAAAAATGGCCTGTAATAATAAATTATGAATGAAAAAATGTGCAAACTGCTGAAAATCGCACAAGATATTTGGGCAGTTTTGCT # Right flank : TCTGTATTTTCATTATCATTATATCAATTTAATATGTCAGTCATCTAAAAAATATATTTTACAGGTGTCTAATAATCAGTGTAATATATGAAGTATAGGTAAAAAATTACAACCGACAGGAGGCAATTTCATGAAAGAAAACCATAGCTTAGAAATGATTGGAATTCAGAATACCACAGGCAAGGTTCACTACAATTTAAGCCCTGCCCGTCTGGTAGAGGAGGCTCTTCGCCGCGGTGAAGGTGTGTTAACAGATACAGGTGCTCTTTCTGTTACTACAGGCAAATACACAGGACGTTCACCAAAAGACAAATTCATCGTGGACACAAAGGACGTTCATGATAAGATTGCCTGGGGAGATGTAAATGTTGCTATCTCTGAGGATGCCTACCAGTCAATTAAAAATAAAATGTTTGCATATCTGGCTGACAAGGAATTATATGTATTCCAGGGTTTTGCAGGAGCTGACAAGAAGTACACCAGAAAGTTTATGGTTGTCA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //