Array 1 9624-9049 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNQ01000006.1 [Clostridium] cocleatum strain ATCC 29902 Ccl_scaffold36_1_size18270_quiver.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 9623 30 100.0 36 .............................. CCGATATTAGCAAAAACGGGCCAATAGTAATCAAAA 9557 30 100.0 35 .............................. CCAGAAACACGATTAGGAATGTATCTATACTCTGC 9492 30 100.0 37 .............................. ATCCATATATAACCAAATTATTAGGGTTGCTACTTTT 9425 30 100.0 35 .............................. CGGGAAGCACCTCCATAACATCGAAAGGAACTAAA 9360 30 100.0 36 .............................. GTATGCTGAAATTCAATCTTACCGTGAGAATTGTGA 9294 30 100.0 54 .............................. AGAGAAGTAGTATAATCACTTCGCATTTCACCAGAAACACGATTAGGAACGTGT 9210 30 100.0 37 .............................. GAAATATACTGCGGATTTAAACGCTTGGTCTAATAAA 9143 30 100.0 35 .............................. GTTTTTTCAAAATATTTATTCATAATTTCAATTGC 9078 30 93.3 0 .........................A...T | ========== ====== ====== ====== ============================== ====================================================== ================== 9 30 99.3 38 GTTTAATAACAACATAGGATGTATTGAAAC # Left flank : TGGATGGTACATTTATTGAAAATAGAGAAGAATTTAGAGTTATATTTGAAGAATTAATGAATAAAAATGATGAATATTTTGTTTTAGCTGATTATGATGCTTATTGTAAAGCTCAAATGCAGGTAAGAGATTTATACCAAAATCGTTTAGGTTGGGCTAAAGTATGTTTAATTAACATAGCTAAGAGTGGTTTCTTCTCATCGGATCGTACTATACAAGAATATGTTGATGATATCTGGCATTTAGAAAAGGTAAAATTTTAGAAATATAAAAAGTTAAAGGAATTGGTTTATATGAAATCAGTTCCTTTATTATTGGTATAAATTTACCAGGTGAATTTATTAGTAAAACCTCTAAAAACGTTGGGAGAGTAGTAAGGGATTAAGAGAATTTGACTGAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGGTTTGAGGTATAATAGAATATGAAAAGTGGCTTATTTACTAG # Right flank : TTAATTAATTATATAAAAATATAATAAGTTATATGCTTGTGAAGCTTTGTTTATAGGTTTTATAGGCAGTTTATTATCTTTGAACTCAAAAGCTATATAAATATAATCTTTATTTTTAATAAAGAAACAGTTTAGTTTTTTATTATTTAGTTTAAGATTATAAATGAATAAGTATAATTTAACTTGAATAATTGTATAATAAAAGGAAAGATAAGTATTTTTTATTGCATTGCCTTAGTTAAGAATATAGGCTATAATGAGGTAGAAAAATGGGGTGAAATTATGGAAAAAAGTGCCGTTAGAATGATTGCACAAATGATAGCTTTGAAAAAAATAGAAGTATTACTCTTAAAAAAGTACTATGAAGGTAATAGTCCAAGGTTTTATTTACGTGATTTAAATAGCGGTGATTTAAAAGAAATAAAAATTTCAGGTAAATATGTGGAAGAACAATTTGTACATTACTATTTCGATGATATTGAAATAGATTTTTGTCGTAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAGGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 343197-342059 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNQ01000039.1 [Clostridium] cocleatum strain ATCC 29902 Ccl_scaffold1_1_size359721_quiver.39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 343196 30 100.0 35 .............................. GCGTTCTAAGTTTGATATGTCCCATTCTGTTAAAA 343131 30 100.0 34 .............................. TAAGTAAGAGTAAGAAACATAGTACATTCATGAT 343067 30 100.0 35 .............................. AGAAGTATATGTTAAAGAAGCTAGTGCTGGTGACG 343002 30 100.0 35 .............................. CTATTTTTGTCATAAATATATTTGATAGTTTTTGG 342937 30 100.0 36 .............................. CCAGTTGAAGTATATGAAGTTGATGGTAACTTTACA 342871 30 100.0 34 .............................. TACGTGAGAGTAAGAAACATAGTAGATTGATGGT 342807 30 100.0 36 .............................. AACAATTTATCAACATTCTTTGTAATCTCATTAAAG 342741 30 100.0 36 .............................. TACTCATCTGCGTCTTTGCCTTTACGTTTTTTAACA 342675 30 100.0 36 .............................. TTAGTCTTAGACAAAGAATAATTTTGATAAATTTCC 342609 30 100.0 36 .............................. GCTTTCTAGTGATTGGATAGAAGAAACACAGTCTAC 342543 30 100.0 36 .............................. GAATATGCAGGATAGTCTTTTTATGAATGATGAAAA 342477 30 100.0 35 .............................. CTTCATACCAGCAATTTGCAATATTTTTCCAATAG 342412 30 100.0 36 .............................. TACCGTTAATAATAAAAAGAGGGATTTCTGCTATAA 342346 30 100.0 35 .............................. AGGTGGAGCTTTGCTTAAGGCTAATAAGTATCATG 342281 30 100.0 35 .............................. AGGTGGAGCTTTGCTTAAGGCTAATAAGTATCATG 342216 30 100.0 34 .............................. GAAAAATTATTTACTGTATTATTTTGAATATCAC 342152 30 100.0 36 .............................. AAATACAACTCTTGCTTATCTCCGTTGTATGTAATT 342086 28 86.7 0 ......................-..-..GT | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.3 35 GTTTAATAACAACATAAGATGTATTGAAAC # Left flank : ATTTTTGTTAATTGTAGCAAACTATTATTGGGGTGATAATAATGAAGAATAATAATAGAAAACAGTCTAAATCAAATGAGGCTCAAAAAACTGCAGTTAACAATCAATGGACTAATAACAATACTAAATATTATCCAGATAATAGAGAACGTCAGGATGGACCTGGTGGTAATTAAGAACCTTTAATTAAAAGTTCTCAGGCTGTTAATAAAGTAAGTTTTTCAAACTGACTTTATCATACAGCCTTTTAAATTAAAAAAAGATTGGTTTTGGAATTTAGTTTTATCAAAATCACTTAGTAGATAATTTGTCAATAAATTTATTTTTTTACCAGGTGAATTTATTAGTGAAACCTCTAAAAATGTTGGGAGAGTAAGAGCTTAAGGGAATTTGACTGAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGTTTTGGGGTATAATAGAATATGAAAAGTGGCTTATTTATTAGG # Right flank : TTTAATTAAAAATATGTTATACAAAGCTCTAATGACAATATTTTTGTATTAGATTTTTTTTATATACCTTATATTTAGTATGTACTTTTATAAAAAAATGAACAAAATGATAACGTTTTCATTAAAAGTGTGTTAGAATGTATATACTATAGCTAATGATAAGGATGATTCTAAGTCAAAGGTTAAACTATTTTTATTATGTTTTTTATTATGTTTAGCCATTAGTATTGTCTGATGGTTTTTTATATAAGGAGGTAAAAATGAATAGTAGAATAGCAATACTTGGTATATTTGTTTATGAGATAGAACGTGCTAACGAAATAAATGATCTCTTACATGAATATAGTCAATATATTATAGGAAGAATGGGGATTCCATATAAAGATAAAGAAGTTTCAGTTATTTCAGTTATTCTAGATGGACCAAATGATATAATTGGTGCTATTTCTGGTAAAATTGGAATGATTAAAGGTGTTAGTGTTAAAGCACTATATTCAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 155377-154877 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNQ01000041.1 [Clostridium] cocleatum strain ATCC 29902 Ccl_scaffold3_1_size230666_quiver.41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 155376 36 100.0 30 .................................... TCAATTCTGTTGAATGTCACTAATGTTGTT 155310 36 100.0 30 .................................... AGAACCATCTTCACAAAGTTCACCTAAACG 155244 36 100.0 30 .................................... AATAAATGTTTGATTAATATCAAGAATACA 155178 36 100.0 30 .................................... ATAATGATCATATTTTAACCAATGCTCGTC 155112 36 100.0 30 .................................... ACATTTTCATTGTTCTATTAACAATATCCA 155046 36 100.0 30 .................................... GCAACTGGTCGAGTATATTTATACATTAAT 154980 36 100.0 30 .................................... TGAACTTTGTGAAATCATCTGGATTTAACG 154914 36 86.1 0 ........................A...T....TTG | G,A [154879,154886] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTTTTGTTACCATATGGAATTTTGCTAGAATTAGAC # Left flank : AGAAATTAGTTAAACTGATTGAACCATATGTAGATATAGAAGGTTATAAATGTGATGAATATGATTTAACATATGAAGAAATCATTATTATTCAGTTAAAGCTTGTAAATGAAATAATAAATAATAACCAAAAATACGATTATATCTTTATTATTTTAGATATACCATGTCTTAGAAAAAAAATCCTGGATGCAATATTGCATCTTTCTAATTGTTTTTTATTTATATGTATTAATAGTAATAATCTCATTGAAAATATTAATTTGAAAGATATTTTGTTATTGGAAAATAAAGTAATAGATTTTGCTGATGAGGAAGAAGTATGTGAGATAATATGTAATAACTGTTATAAACCGATTTATTTATACGAGGTGGAAGAGTATATGAAAGAATATTTTATTAATAGTGGTAGTGAAAAGTGTAGCTTTATAAGAAAATTACTGAATAAATAATGATATATATTTATTAATTTTCAAAACTGTGTTAGTATTAGTTTTGAG # Right flank : GTGGGAGGAATTGTACATTCTTATATTTGAATGATAAAAGAAAGTTAATTAATTAGATTTTAAAATATTATATTGCTTTGGAAATTGATATATGAGGGTATATAAATGTCAATTGAAAAAATAAAAAAATATTTTAATAAATACGGTAGTAAAAAGTGAATATAAAAGTTTGATTGTCTAGTGCTGCTATGGAATTAGCTACTCAGGCTTTGAATTATGAGTCTTATAGAATTGCAATAACACTTTTATTTAAGATTGATATTATGGTATTTTAATAGTTATATTAGGTGATACAAAAATTGATAATTTAATGGTAAAGCATTTTTTTTAAAGCAAAGGCAAATACGCTTTTTTTAGAAGAAATATTAGATTTGATAGATCATGATATAAGTAGTGTTCGTCGTTTTGTTATTAATGCTGATAAAGAATTATGATAGTATTTAAATTATGAATTTTGGATTGATGTTTGTAGGATTGCTTAATTGAATAAAAGGGTTATT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGGAATTTTGCTAGAATTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 17895-17014 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNQ01000017.1 [Clostridium] cocleatum strain ATCC 29902 Ccl_scaffold5_1_size240249_quiver.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 17894 30 100.0 36 .............................. CCAGTTAAATCAAATGGAATTTTTTCTTTAGAAGCA 17828 30 100.0 36 .............................. TTTGATTAATTAAATTAGTTAAATTCATAAAAATCC 17762 30 100.0 34 .............................. GCTAAATGCCAAGCGTCCAAAGATTGTTTATAAT 17698 30 100.0 35 .............................. CTGACGAGGTAAACAATGCCAAAAAACGTGAAGAG 17633 30 100.0 36 .............................. AGAGTCTAGATATAAGAGATATAGATAAAAAAGATA 17567 30 100.0 36 .............................. TCATTCTCAGTTGTTTGCAAATCGTTGGTTTTAGAC 17501 30 100.0 35 .............................. AAGTAGCAACCCTAATAATTTGGTTATATATGGAT 17436 30 100.0 35 .............................. CCTCCTTTAAAGCTCTCGAATTAATTTAGAAACAC 17371 30 100.0 35 .............................. GGACCTTTTTGAGGAGAAGGAAGAGCACTAGTGAA 17306 30 100.0 37 .............................. ATGTTTCTAAGTAACATGGCTAAATCACAAGACTCAC 17239 30 100.0 35 .............................. AAAGAGCTCCGCCCTGATAACTACGGTCGGGACTG 17174 30 100.0 36 .............................. CGACGAACATCTTCAGGGAGTCCGTTAAACAGATTT 17108 30 100.0 35 .............................. GCACCTTTTTATGTGAATAAGGATGGGTTATATGA 17043 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 36 GTTTAATAACAACATAAGATGTATTGAAAT # Left flank : GAAACCATTTATACCTTTTTCAATAAAGGATAAATATTAATGAAGATAAAAAATTATAATTATGTAATTGTATGTTACGATATTGGGGAAAAAAGAGTAAATAAAATATTTAAGATATGTAAAAAGTATCTTCCTCATTATCAATATTCTATTTTTAAAGGTCCCATTACACCTTCTAAATTGATTTTATTGAAAAAAGAATTACGAAAAGCTATAAATAAAGAAGAAGATTGTGTTAGTATTATTAAATTACAAAGTGAAGATTCGTTTGATGAAGAGGTTTTAGGAAGTCAAAAAGAAGAAAATAAAGATAGTTTAATTATATAATTTACCAGGTGAATTTATTAGTGAAACTTCTAAAACCATTGGGAGAGTAAGAAGTTAAAGGAATTTTACTAAAAAATATAAAAAATAAAATTGCCTGGTAAAAAAATATAAAAGTGTTGATATATAAAGGTTTTGAGGTATAATGGAATATGAAAAGTGGCTTATTTACTAGG # Right flank : TATATTTTTTTTGCATTAGTTGTCTCAATGATTTTAGTTTAGATATATTAAAATTCTGTGAGGGTTAAACTTAAAATATTTATGATATATACTATAATTAGAGAGTAATTAATAATATGAATAGCATCATTTGATAAATTGTGGTAAACTTTGAAACATGGAGTGTAGGTATGAAGAATAAATATGTGGTTTTAGATTTTGAAACGACTGGAATAAATAAATATTATGATGAAGTAGTCCAAGTAGCAATAATTAATCAGAATGAAGAAATTTTAATTAATGAATTGTGTAAACCAAAACATCATTTTACTTGGGTAAATGCACAAAAAATACATGGAATATCTCCAGCCATGGTAAAAGATAAACCTAGTTTTGAAAGTTATATTGAGATGATAAAGAATATATTTGATAGTTGTGACTTTATTGTTTGCTACAATGTTGCATTTGAGCAAGGTATATTAAAGAATTATGGGATAAATATAGATAAATATAAATTTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 36868-36172 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNQ01000017.1 [Clostridium] cocleatum strain ATCC 29902 Ccl_scaffold5_1_size240249_quiver.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36867 36 100.0 30 .................................... ACATTTATTTCCATTTTTATAAGTGCCATT 36801 36 100.0 30 .................................... TAAAATTTTTTCATGGTATGCCTCTGTTGA 36735 36 100.0 30 .................................... ACAATGAAGAACTGTACGATATCACCGAAC 36669 36 100.0 30 .................................... TATTATTTCTTTGTTCCTAACAGATTGACT 36603 36 100.0 30 .................................... TTCCAATCCAAAAACAATAACATGATAGTG 36537 36 100.0 30 .................................... TCCAGAATTTTTAAGCGAAGCAATAGCATC 36471 36 100.0 30 .................................... TTCTTTCCAATGGTCCCAAGTCAACCTATT 36405 36 100.0 30 .................................... AATATCTGCGGGATAGTATAAGTAGTAGTA 36339 36 100.0 30 .................................... AGCATTTCGTATGATAAATCTAACGGGCAT 36273 36 100.0 30 .................................... ATACCATATGGAATATCTGACAAAATCAGG 36207 36 83.3 0 .........................GA.TTT....T | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Left flank : GTATTAGCAAAAATATATATGACAATAAAAAATAATATAATAGATGATATAGATAAAGAAACCACTCTTTTAAATGATATAAATAAAGTAAATGGTTTATTTATTGAGGAACTGGAAAATTATAATTTAGATTATTCTTATGAGACGAATATAAAGATAGAAAATTATTTAAAACTGTTAAATTTAAAAATAGTAAGTTCTGGAGAATCAGTATTTAATAAGATGATAGATTTAATTGAGATTTATTCAGAATTGTTTAATGAACATGTTATAATATTTATAAATATTATGTCGTATTTGAGTGATGATGAACTAGAGGAAGTCTTAAAATATAAGAGGTATAAAAAATTAAAATGTATTTTTATTGAGAATAATTTTACTAGAAATATAATAGCAAATAAGTATATAATAGATGATGATCTATATATGTATAAATTATAACACTATCTAAATTATGGATGAAGTCGTTATTCATTTATACTTTTAAAACCTAATTTGAG # Right flank : CAATAGACTAAATCACATATTTAGAAGGACTTGGAGTAAAAATTATTTATAGTGATGCACAAATTAATAATATCATTATTGATAATAAGATTTTATGGATTCCAAATTATGGGTATTATGAAAAACAAAAGAATGTAAATGCATTTCGCATTAAAGATGTTAATGTGATTGAGGAAATTATTTCAATGATAAAAGATAATGATTGAGATGATTGATAATAAATGTGGTATACTATAGGGGGCATATAATATACTTATTATTTGGAGGTGTTTGGATGAAAAGGGTTCCAATTGGTGTAGAAGATTTTAAAGAACTGATTTCTAATAATTATTATGTAGATAAAAGTGAATTGATTAAAGATATGATAAATGAAAAAGTTGTTTTATATACTAGACCAAGAAGATTTGGTAAAACATTAAATATGAGTATGTTATATTATTTCTTTTCAATTAAACAAAAAGATAATGCTCATTTATTTAAGGGATTAAAAATAGAAAAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 32561-31364 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNQ01000003.1 [Clostridium] cocleatum strain ATCC 29902 Ccl_scaffold14_1_size87359_quiver.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 32560 31 100.0 35 ............................... CAATTTCGTATTTAACTTTTTTCTTGATTTTTTTC 32494 31 100.0 35 ............................... ATCGTACGATTATAGTAATTAAGCATTGTCTTTTC 32428 31 100.0 36 ............................... TGATATGACTCAGGCTGTTGACAAATAAAAAATTGT 32361 31 100.0 36 ............................... ACATTCCAAAATGTATCAATTGCATATGTATTTTCT 32294 31 100.0 41 ............................... TTTTCCACTGATTAAATCGTTCAACACCTCAATATCATTAT 32222 31 100.0 33 ............................... CAGGCCGAGACCAATGGCTGGTGAGTTAGTTGT 32158 31 100.0 41 ............................... TTTATCACTATGTGCATCTAAACGTTTATCTTGTCTGGTGT 32086 31 100.0 37 ............................... CCAAATCTTCTCGAACTTCTTCAAATTTAAGCATCTT 32018 31 100.0 45 ............................... ATACTATACCTTTGTTCTAAACGTAACCGTCTTGCTAATTCGTCA 31942 31 100.0 38 ............................... AATTGTTTGTGTAGTAATTTATGTTGCTTATACAATCC 31873 31 100.0 35 ............................... TGATAAATGAGTAGTCAATATCACGTGTTTCTTCA 31807 31 100.0 37 ............................... TCCAATAGTATTAATAATACGTTCTCTTTCTGCTTCC 31739 31 100.0 41 ............................... CTAAAATTTCATTGGGATTATACCCATTATCTTTACACCAG 31667 31 100.0 35 ............................... TTTAACTGATTATTCAGTGCTTTACCAGCATTTTT 31601 31 100.0 38 ............................... AGGGCATAATTTATCTAATAAAAGAATTAACTCTATTT 31532 31 100.0 37 ............................... TTTATCTTTCCATAATCTTTCCATCCAACATTTGCAA 31464 31 100.0 38 ............................... TTTAACTATCTCATTTGAAACTTGCTTAACTACCTTTT T [31451] 31394 31 93.5 0 ............................A.T | ========== ====== ====== ====== =============================== ============================================= ================== 18 31 99.6 38 ATTAGTTATTGTTCTTATAAAGGATTAACGC # Left flank : TATAATTACAAGAGAAGTATATAAGTTATCTAATTATATAGAAGGTAAAAGTAAATATTATAAACCTTATGTAATGGAGTGGTAAAAATGTATATTATTTGTACTTATGATGTAGCAGAAAAAAGATGTGTTAAAGTAATGAAAGTTTTGAGAAAATATATGTTTCATGTTCAAAATTCTGTTTTTGAAGGAGAGTTAACACCCTCTAAATTTAATGAATTAAAAGTTAAATTAGATAAAATAATAAATCCAGATGATGCAATATTGTTTTATTTTGTGTATGAAAACAAAAAAATAAAAAAAGATTATCTTGGAAAAGCACCAAAATCATCAAATATTATAATTTGATTTTCGACTATCCCATTGTTTTTACTGTATGAACAAGAATAAAATAGATGGTTTAAAGGAGGTAGTCGAGATTGTTTGATGAGTATACTATTGATTTTTTAATAGATACAAAGTATCATAGTATATATTTAGATTATTTCTAAATATATACT # Right flank : TTATTTAATAATTTTTAAAATTATTATTTTTTAAAGATAGTTTTAAGATATTACTAAAAATAAAAAAGGATTAGTACCAATCTTGGTAACTAATCCAGTTTTCATATGGAAACATATGTTTCAGTTTATTACAGGTCTTTTCCTGGGAAATATAGTTTGATATTAGTTGATTTTTTTGTTTGAGTAAATCGTTGTTATAAAGATGTTTCATTGGTAAGATGGGGTTACTTTTACGATAGTAATGCCCAAAATATTTTAAGTTACTAGTTAAATTGATATCTTTTGTTATAGATGTAACAATTGCACTAGTCATTTTATGATGAGCATGACCATATTCACCCTTGGGATTATGGGTAACGATAGTTGCAAAGGTGTGATTAGATAGTATGTAATTTAAATCTTCTTCAATATCATGATAGACTTTTTTCCAATTATCACGCTTACCATTAGTTTTATCAGGATAGTCTAGAATAATTCCAGTATTATGAGTTTGTTCCATG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGTTATTGTTCTTATAAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [93.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2795-2310 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNQ01000023.1 [Clostridium] cocleatum strain ATCC 29902 Ccl_scaffold17_1_size60130_quiver.23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2794 30 100.0 35 .............................. CGTGAGTCTTGTGATTTAGCTATGTTACTTAGAAA 2729 30 100.0 34 .............................. ACGATGTACCTATCAAAGATACAATAGGAAATTA 2665 30 100.0 36 .............................. TAGATTGCATTACCAGTACCAGTATTTTTCAAAAAA 2599 30 100.0 35 .............................. CGAGACATGCGAACAAATTCAGGAACAATATTGAA 2534 30 100.0 34 .............................. CCGCTAACACGATTAGGAACATATCTGTACTCTG 2470 30 100.0 35 .............................. ATAATGCATATATAGATATTCCGTGCGGACAGTGT 2405 30 100.0 36 .............................. TTTTTCCATTCAACACCTTTTCCTGTATCAGGGTTG 2339 30 70.0 0 ........G..G...GTAC.A....T...T | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 96.2 35 GTTTAATAACAACATAAGATGTATTGAAAC # Left flank : CACTTGTATTGATTCCATTTAATGTTAGTTATGATTTAAGCTTGATTGTTACGTCATTAGCTGCAGTTATATTTGGTGGAATTATTGTCTTAGGATTATCAAAAATTCAGTAGTATTAAGATCAATAATGCTTTTAGTATTATTGATTTTTTTTATGTGAAGTATTAGCGAATCAATTTTTTCATAAAAAGTATAGTTTTTTAATATTAGTGATTTTTAGATTTGATTAGTGGTAAATAGGTTATTAAGTTTTGAATATTTTAGCATTGATTTAATATTTTTAGTATTTATAATTTTTATATTTGAAAGAGTAGAAATCAGTGATTTTTACCAGCCGTATTTTGCAGTGAAATTTTTAAAACTGTTGGGAGAGTAAGAAGTTAAAGGGATTTTACTAAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGTTTAGGGGTATAATAGAATATGAAAAGTGGCTTATTTACTAGG # Right flank : AAATTTTTAGTAATAATTTTAAATGTCTTTATTTTGTTTTATAACAATATAATGTATTAAAAAATTGTGAATAACTTGTGACTAAAGTGAATATCTTTCAGTAAGGATAACTATTGTTATTTTTTGGTTCAGTTATATTATGTAATAAATCCTAAATTCTATGATTATTATCATAATATGATAACATCAATTTTAAATAGAGGATTATATTTTCTAAATTTGAGGTTGTTCATTAAGTCACAAAAATCTTACCTGAATTTTTTTATTTAATTGCTGATTTTCATTGTTAATGCTTTTTTGAGTTTATCAATATGATGAGATATTTTGTAATATAATTATTAAAAACTAATTTTTAATAAGACATGGAGTTATTTATTTTTATACTTTTGATCTTAGTTAATAATTTTGATACGATTATGTAAATGATGTTGATAATACTATTGGGGTAACTGTTAATGGTATATAAAGATTATTATTTGTATGGGAATTTTTTAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //