Array 1 2614018-2614783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023778.1 Nocardia terpenica strain NC_YFY_NT001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 2614018 28 100.0 33 ............................ CTTTCTCATCCAATTGAAAAAGAGGCATCCTAC 2614079 28 100.0 33 ............................ CAATCAACAACCCGTATTCGTACTGGGCACAGA 2614140 28 100.0 33 ............................ TAAACAGGAGATTGCGGATATAGTTCCCGACAC 2614201 28 100.0 33 ............................ CTACGAACCACTGAAGTCCTGCGGACGGCAGGA 2614262 28 100.0 33 ............................ CGTCGATTTTCCGGCGTAGGGGGCGCCGATGAG 2614323 28 100.0 33 ............................ TAACGCAGATGCGGAAACCAAAAAGCAATTGCA 2614384 28 100.0 33 ............................ CCGGCCTCGCACAAGGAGATCCGACATGCCCCT 2614445 28 96.4 29 ..............T............. CTCCCCCTGGAGCCGGTGCCGACGGCCAC 2614502 26 89.3 33 .G..........--.............. CGAGGCCGCGGTTGAGGCATACGACGCCGAGGC 2614561 27 89.3 34 .C...-...A.................. CAGGGCGCTGTCGGCGATAGTCTCGTCGGTGATC 2614622 28 92.9 33 ................T........A.. CGAGACACAACGGGTTCTGGTGGAGTCGCTCGA 2614683 28 89.3 44 ........G.....T.......C..... CGGTCAGCACAGTACGGTCAGCACAGTACTTGCTCACGAGAATG 2614755 28 75.0 0 ....G.T........A.CAA.G...... | G [2614757] ========== ====== ====== ====== ============================ ============================================ ================== 13 28 94.8 34 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : GTCCGTTGCTGAGCGGCAACAGCAGGCGGCAGATAGTCCACGAAGGTGACCTCCCCGTGCTTGGTGGGCCTGTCCAGCTGTTCGATCGACTTCTCGGGGGTGGATCTGTTCCCTGCCATTTTTCCAACTTTATCTGAGATGGATAATGTGGCCGCCTGCCGCGCAGGATGGAATAGTGATAACGGATCCCCAGGATGTCCTGAGACGCGTGCTGACCGAGCCGACGGTCTCGGTCGATGACGCGGCCCGAGTCCTCGGCGTTGGTCGGTCCACCGTCTACGCCGCAGTGAAATCGGGCGAAGTACCCGCCATTCGAGTCCGCAACCGGTTGCGGATCCCGTCGAACTGGGTGTGCCACATGCTGTATCTGGACACCGGCCCGGGGTAGCGGCGTTTCGGAGTGATCTCGTAGGTAGCTGTCACCGCGAGATGTTCTCTCGATAGGATCGAAAGTGAATGAAATTCCGGCCGACTGCGGTGATCGTCGCAGGTCAGCAAGT # Right flank : CCACTGATCGGCTGGCTCGCCGAGCACTCGGGCGTCCTTCCGTTGTTCAGGAATCGGATCCGGGAGAGTTTCGTCGGCGTAGCTGCCGAATTGTTGCGCGACTGGACGGTTGCTTTTATTTCGCGCATTGCAGTGCTGAGTGCTGTTGATACGTCAGGGTTTTGGTGAGTCTACTCGTTCGTGAGTGCGTGTCGGTGGTGCGTTGTACTCTGCTGCCGTTCTCAGCGTATCGGCGGTTATCGTCTCGTTTGGGGGTCCTTGTTTTGTTGTCGGATGCGACGTCGTCGGCGTGGGCGAAGAGCGACCGTGATGGCGGGAGTCTGTCGCTGGTGCGGCATTTGGCTGATTCGGTGGCTGTGGCTGGGCTGGTGTGGGATCGGTGGCTTCCGGAGCGGACGAAGCAGGTGATATCGGCTTGTCTGCCTGGGGGTTTTGCGGATGGGCGGTTGCTGGTTCGGTGGCTGGCGGGGGTGCACGACATTGGGAAGTTGACTCCGGTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2624007-2624157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023778.1 Nocardia terpenica strain NC_YFY_NT001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2624007 28 100.0 33 ............................ CTACCCGCCCTCGCATACGTACTCGGCGTCTCG 2624068 28 100.0 33 ............................ CTGGCCGAGGGCGCTGCCCAGGACGCGATCGAG 2624129 28 78.6 0 .............AT.......GAG.T. | T [2624154] ========== ====== ====== ====== ============================ ================================= ================== 3 28 92.9 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : TCTGGGATACCGACGTCGTCGAGCTGTGGGACCGCAAAGGCAATGTGGCTGCTGGCATCTCCTACGACGACGAAGAACTGCCATGGTAGTAATGGTCCTCACCGCTTGCCCCGCCGGGCTACGCGGACACCTCACCCGATGGCTACTCGAGATCAGCCCCGGCGTCTACGTAGGCATCCTCACCACACGAGTCCGGGAGCTGGCCTGGCAACGAGTCGTAGAGCTGTCCCGCGACGGCCGCGCGATCATGATCTACTCCACCCGCTCGGAACAACGCCTCGCATTCAAAGTCCACCGCCACGACTGGGAACCCGTCGATATCGACGGCATCCACCTCATGCGCCGCCCTCATACCGGAACGCACGCATCGGAGAAGCCGCGACCAGGCTGGAGCAAAGCAAGCAGATACCGTAAAGCCGCGCGGCGGGCAAACAATCGCCCCACGACTGAAAGTGAATGAAATTCTGGACTTCGGCCGCCGATACCGCAGGTCAACAAGT # Right flank : CGGCGGAACGTGAAAACCGATCACTGCGTGGCGATAAGCCAGTCGGTGGTGTCTCGATTCATAAGGAGACACAATCGGATTCAGGCTTCGAACCAGCCTGTTCGGCGTTTGTGTTCGTAGTATTCGTCGTCGGTCCAGGCGTCATCACCGGTTGGCGCATTCCGCGCTGCTGCCCGGGGGTCGGGGGACAGGCGTGCGTTGTAAGGATCGCGCGGTGATGCCGGATTCGTGTATGGGGCGGCGGTAGGCGGATGATCGCGAGATGCTGTTGCGGGTGGCGGGGCAGCCGCCCCAGCAGTATTCGTGTCGTCGTCCGTGCTGGGCGCTCGCCATCGTGACGGGTCCGGAACCTGCGATGTGGCCGTCGCATCGGATGGTCCGGAATCCACGGGCTTCGCGCCATGGCATGCGTACCGGTAGACGTTCATGATCAGTTTGGCCAATCTGGCCGGGCCGTGAGCGTAGGCTTCCGGCCCGACGTCCAGCGAGTGCAGTCGGCC # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2635101-2635849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023778.1 Nocardia terpenica strain NC_YFY_NT001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2635101 28 100.0 33 ............................ CAAGGATGGTAGATCGTGCAACACTATTGGATA 2635162 28 100.0 33 ............................ CATGAATTCAACGAGATAGAATTGAGGATTATA 2635223 28 100.0 33 ............................ CTGTCCGAATACGGTCCTGACAACAAATACGTG 2635284 28 100.0 33 ............................ CGGCACGCCGAGATACCGTGTCCTCAAACCCAA 2635345 28 100.0 32 ............................ GCGACACCTTGCTCAGGATCCGGCCGGGCTAC 2635405 28 82.1 33 .C.TG.T..C.................. CGTGTTTCGGCTCTAGTCGTGGTTGGTGTAGAG 2635466 26 92.9 34 ................--.......... CTATGAGCGCCGCCTGCGGCGCGCATGGACGTTC 2635526 28 100.0 34 ............................ CGCGACCAGCTTCGAACTGCTGCTATATGAAGTC 2635588 28 96.4 33 .............A.............. CGGCGCCCCGCTGCCGAAGTCCGAACAGCTCCG 2635649 26 89.3 31 A...............--.......... CGACCACAGATCCAGCTCCTCGATCGTGCGA 2635706 28 85.7 33 ...TG.T..C.................. CGAAGGGCTGGTGTTCTCCCGGCAAGGCAGCGG 2635767 27 89.3 23 ................-...A.C..... CGCGGAGACGATGTCGACCGCAG Deletion [2635817] 2635818 28 75.0 0 .GC...A.G.T.......CA........ | TCCC [2635831] ========== ====== ====== ====== ============================ ================================== ================== 13 28 93.1 32 GTGCTCCCCGCGCGCGCGGGGATGAGCC # Left flank : CCGTGGCTGATGTTCGGCCGGTCCATGGTGGATGCCTACATGATCACCATCCAGGCCGACCTCATGCACAGCGGCTACGCGATCCAACAGGCCGCGAAGGTCGATCTCCGCAAGATGCCCTCTGCGACGCGGCGGAGCTTCCATACCTCCGAAACCGCACGTGCTCACCACATGCGTGACGAGCCGCTGGCCACGGTCGCCCTACTCACCAAGGCGCAGAAGGAATCACCCGACACATTCGGCTTCTCGCTGTTCGCGCAGTCTGCCGTTCCGGATCTGGTCGAACACGGCGGCGCCACGGTGCGGCCGGATGCCGAGCGGCTCGCGTCCATTCTGGGGCTCGACACCTGAGCGTGGCGAAACCGCGCTCACCAAGTCGATCGGATTCTGCCGCATGCACAATGTTGGGTCGCCGCCGAGGAGCTGGGGGAGATGTTCGAGGGCCGTTGAAAGTGAATGAGATTCCGGCTGACAGCGGGTATCAGCACAGGTCAGCAAGT # Right flank : CAAACGACAAGATTGGTGTCAACGGCAGCTGAACTCTGGATCTGGCACAAATTTCGTGACCCGACCGACCGGGTTGTTCACTCGCTCAACAGGATTCGCTTGCGGAGCAGGTCGGTTTTCGCGCGGCCGAACATCTGTCGCTTGAGCATCTTGATTCGGTTGACATGGCCTTCGACCGTTCCGCTGCTCCAAGACATGGTCAGCCCGGCGGTGACCGCGTCCTGATCGCTGCGCAAGCCGCGCACGAACGAGTGCAGCGCGGGCTGGTCGTCGGCGTCGACGGTGGCCATCCACCGTTCGAGATCCTGCCCGCGCCGCTGGCCCATGATGTCGGCGAACGCGCGGACGTGCCCGGTCAGCGCGGCCAGTTCCGGGCTGACTGCCAGGATCGCGTCGAGGCTCGTCCGGTGCTCGGCGGCGAGGGTGGCGGGGTTGGTCATGATCCAGGCGACGACTTTGCGGACGGTCGGTGGCTTGGGTGGCGCGACCGGGACGTGCGT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //