Array 1 489323-486591 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZF01000017.1 Liquorilactobacillus sucicola DSM 21376 = JCM 15457 strain DSM 21376 NODE_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 489322 30 100.0 37 .............................. TAAATATATTTTATTGGACGAGCCTACCAGCGCACTC 489255 30 100.0 36 .............................. TAGCATCGGGTCTTTGCATACCAGCAATCAAGAAGA 489189 30 100.0 36 .............................. AAAATTTTTGCAGCGATTGCCGCAAATGGGTTGCTT 489123 30 100.0 36 .............................. CTTATCAGCACCAACTTTATCAAGCACCCAGTTAAT 489057 30 100.0 36 .............................. TGCTGCTACTAAAGAGCAGGTAGCCGCTGCTGAATT 488991 30 100.0 36 .............................. TAACTACAACTACAGTTGGCAATCCAATCAGCCATG 488925 30 100.0 36 .............................. TGCTTAACGAAAAAGGCGTTGGTGAAAAGATATGGC 488859 30 100.0 36 .............................. CAGTAACTAGCGGAGCTTCAACGGCTGGCAAAATTG 488793 30 100.0 35 .............................. CTGATAATGACATCGGAACAGGAATGGGCGTAAAC 488728 30 100.0 36 .............................. TTCTTAGTAGAAAAAGGTTTCTATAAAGATGATTTG 488662 30 100.0 36 .............................. ACAGGAACACGCAATTCAACCAATAACTCATGGCAG 488596 30 100.0 36 .............................. GATGTTAAGGCCTTTTATCACGAACTTAATCGTACT 488530 30 100.0 36 .............................. TCTATATAGAACTCTCTGCCCTTAACCTCTAGTGTG 488464 30 100.0 37 .............................. CATACTATAAAATACTCAAAGGAACAAGCCCAGATAC 488397 30 100.0 36 .............................. TTAACCAATCAATTGAAGTAACCGATGAACTAGATC 488331 30 100.0 36 .............................. ATCAAAAAAATAAACGTCGGCGATGTATTCAAAACA 488265 30 100.0 36 .............................. ATGACAAGCTTAAGCTACACATTTAACAGTGATGAT 488199 30 100.0 36 .............................. TTCGTATGCCCACTTGCTCAACACAGCGCCGATCAT 488133 30 100.0 36 .............................. ACCTCTTTGCGGATTGTCAAAATTTCCAGTGCTGAC 488067 30 100.0 34 .............................. GCATGTGATGTTCTTTTTCTTTCAGTTCGGTCAT 488003 30 100.0 37 .............................. AGATATGACATCAAGGACTTAGATGAGTTTGCTGATA 487936 30 100.0 36 .............................. AGAAACATCAAAACCAAATGCCTTTCTCTATTTGCA 487870 30 100.0 36 .............................. ATCTGTTGATGGATTAGGTAGCGAGGGTAGTAGCTC 487804 30 100.0 36 .............................. TTAGCTAAATCTAAATAGCCGTGATCGGATAAACCA 487738 30 100.0 36 .............................. CGCTCTAAACTCGATTTCTCTGCTCATTTATTTTTC 487672 30 100.0 36 .............................. AGTTATAAGGCTGACTTGGAACGAGGGAGCAATAAG 487606 30 100.0 35 .............................. GAATAGGTGGCTTGTTTATAATTGTAAACATTAAT 487541 30 100.0 35 .............................. TACATAACTAGCTTTAGTATGAAACTGAGCTAGAG 487476 30 100.0 35 .............................. TCTGTAGTTAAGGTATACCATTTATTACCCCCGTC 487411 30 100.0 36 .............................. GTAATCAGACTCACAAGAAGTAGCATCTTGTGGCGT 487345 30 100.0 36 .............................. CAGAAAAAAAGTGAAGTTTCTTTTAGAAGCGAGAGA 487279 30 100.0 36 .............................. ACAAATAACCATTCGAAGTTCCATTCAGATCAAACT 487213 30 100.0 35 .............................. AGTCATTAGCATATTGCTCATCAGTTCGTTGATGC 487148 30 100.0 37 .............................. AAGCGCTTGCTAATTGAATACAAATCAATTCCTTGAG 487081 30 100.0 37 .............................. GCAAAATAAGATGTGATCGAGCTTGTTAGCATTCCTA 487014 30 100.0 36 .............................. AGGATAATTAACTTCCAGGACATTCTCGGCAAAGGG 486948 30 100.0 36 .............................. GACTTATACTTTTTGCCTAAGAAGTCCAAAGCTTCA 486882 30 100.0 35 .............................. ACGACTTAGGCAGAAAGGTTTCAAAGAACCAGAAC 486817 30 100.0 35 .............................. CTGTTTATTTGAACTTGTTGAGACACGCCATCATC 486752 30 96.7 36 ............T................. CAGTCTAACTACAATGCTCTCTTCACAACTGAGGAA 486686 30 100.0 36 .............................. TATCAAGAGGACAAAGTTAGATTTAATGAGTCAGAA 486620 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 42 30 99.9 36 GTATTTATTTAACTTAAGAGGAATGTAAAT # Left flank : AAAGGAATACGTACCTTTCCAGCTTTGGTGGTGATATTTTATGTACGTAATTTTAGTTTATGACATTGCAGCGGACAAACGAGGGGCCAGAGTATCAAGAAGAGTATTCAAAATATGTAAAAAATTTTTAACTCACGTTCAAAAATCTGTATTTGAGGGACAATTATCAGTTTCTCAACTCAAACAGTTAACAACTGAATTGAACCAGTGGATTAGGGATGATCGAGATTCGGTTATTTTATTTAAAAACAGAAATAAAACCTGGTTAATAAAAGAATTTATTGGAATGGATAAATCGGAAGATACTTCTAATATTTTTTAGTCTGTCGACATTGTATAACGCAATTATTAGGGAGGATCGACAAATATGATTTTTCTAGTATTTTGTTGAGATTATTGTTAGAATGTATTCTAACAATTGTGTTTTCCTATCTTTTTTTTAGACTTCGACAGAAACACAATCAAAAGTAGCTGATATATCAACGTTTCTGGAATGCGGA # Right flank : ATTGTTGTCAAATGTACCAAAAATCTCCGCATCCACTTTCTTACATTTTATTTCTGCCTTCCAAAGAACTTAAATTTTACCCAAAATGAGTTATTCATTTAAAAATGTAATCTCCAAAGTTAGATTGAGGTAAAATCGGGCTGGTCAACAGCGTTGATAAGGAGGAAAAGAGACATGTATCTAGAATATAACGATCTGAACAAGTACCTGCAGGATCTACCTGAATTAGAAATTAACTCTGTTGAAATTCAGAATCTTTCCGATAAGTTATTTGCTAATGCAACTGATGAAATCAACATCATTGATAAAGCTTTTAGATTCGTACGCGACCACATCGCACACTCGCACGATATACAGGCAAGCGAGGTAACGCGAACTGCTATAGAAGTTCTCAAAGCCGGTCATGGAATTTGCTATGCTAAGTCAAATCTACTCGCCGCGCTTTTACGAAATGGTAAAGTTCCGACAGGTTTTTGCTATCAGCGTCTTATATTATTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 3616-3795 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZF01000001.1 Liquorilactobacillus sucicola DSM 21376 = JCM 15457 strain DSM 21376 NODE_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 3616 28 100.0 48 ............................ ATAAGTAATATTATTTTAAAGTAACAAGCTTTGTATAAGGCTTATTGT 3692 28 100.0 48 ............................ GACACTAAAACTATCTTAATGTAATATATCTTATGTAGAACTCAATAT 3768 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 3 28 100.0 48 TAAGCATAGGTATATATACCTATGCTTT # Left flank : TATTTTTCTTGTTTTCCCAAGTCGTTTCAGCATGAGCCCCGATATTTTCCACATGATTTTCAATTAAAAATTCATATTTTTCCTTCTGTATGATTCCAAATTTAATGTGGTATCCCCCCCAAACAATATCTTCAAAATCAATTTCGCTATTATATTGTTCAATCACTTTACTTTTTTTTTGCGGACGAACGTCAAGTTTAAAATTAATAACTTCATACCCTGCAGCAGCAAATCCATCAACTAAGGACTTTTTTATCATGGGTCCATATTTTTCACAATTAAAATTAACACCCTCAGTAATAGCAAAATCAATATCTTGTGAAGCACGATCGGTTACTCCCTGAAATTCTAAGGCATTGCCACCTTTTAAAGTTAATTTGTCTAAAAGAATGTCATTTGAAAAAATTGAAGTAATTACTGTATTTCTAATTTGTTCTTGATTCATAAGCTACCTCACTGTCCCATCTTATTTTTAATAATACCATTTTTTTGTCTTATGC # Right flank : TCTAAATAAAATTGTTTGAATAAGTATAGGAGTAATTAATATGAAAGGTACTGCTACTCAGCAACTCTTAGATAATAAAATGGATATACTTAAATTTATTTCTAATCATGGGAATATTCTTAACAGAAGCTCCTTAATGGAGCTTCTGCATACATTGCAAAAACAAAAAAATATACTAAATGAAACGACACTATATGGACTTACAACTCTTCTGGTACGATTAAACTTCCTTGAATCAGTAAATATTCTTTATCAAAAACGGTTACTTTATCGCTATTTATCGACAACTACGAAACTTAATGCATACGAAATTGCTCTTAGTATTGCTCCAAAAAAAGCCCATTTATCCCATCTTAGTGCATTATATATTAATGGTATTACTAACCTTGATCCATCAACAATATACATTAATTATGAACAATCACCCAAACCTATAAATAAAAGCAACGCAAAACTAACACAAAAAAAAGTTGATCAAGCTTTCCTTAAGCCTGTTCGTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGCATAGGTATATATACCTATGCTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.80,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 37915-36908 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZF01000002.1 Liquorilactobacillus sucicola DSM 21376 = JCM 15457 strain DSM 21376 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37914 28 100.0 33 ............................ CAACAGCGAAATAGTAGGTGGCGCAATTGGTGG 37853 28 100.0 33 ............................ CAAATGGAAGAACAATTTGCCAAGATCCAACCA 37792 28 100.0 33 ............................ TAAAGCTGGCAGATTATTTCAAAGTTAGTATTG 37731 28 100.0 34 ............................ CTATGAAGACATGGTCTACCCTGCTGAAGAAATT 37669 28 100.0 33 ............................ CTTCCCCAATGGCTCTTTGAAGTAAATCTTTTA 37608 28 100.0 33 ............................ TAACGTCTACAGTTGCACCATTTAGTATTCCCG 37547 28 100.0 33 ............................ ATACTGGTCGTTCCTCGGCAGTTAGTGGAATGA 37486 28 100.0 34 ............................ TAGCTTCAAACGTTCCACAAGAAGCGCCCACACA 37424 28 100.0 33 ............................ TGTTCCATCATCTTTAACCATATCTGGATCGAG 37363 28 100.0 33 ............................ TATAATCAAGCAAAGTAGTTACCCATCCAGTTA 37302 28 100.0 33 ............................ CAAAGCTAATCATTCTTTTTGGTATTATTATCG 37241 28 100.0 34 ............................ CGCCACCGCCTGCCATTCATAACACCAACTTTCA 37179 28 100.0 33 ............................ TAGCTCTGCTGCTTTGGCACCTCTTCTTGCCTC 37118 28 100.0 33 ............................ TGAAATGCTGATTGTGTTGCAAGGGGCAAATCA 37057 28 100.0 33 ............................ TCTAAGTAGTGATTGCTTAGCAAAAATTGATAA 36996 28 100.0 33 ............................ TGTAATGTTCTTGTGTGTGCTGAAAGTCTGAAT 36935 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 100.0 33 GTATTCCCCGCGTATGCGGGGGTGATCC # Left flank : ACAGGTCTAGATGTTACGAAAGATCAAATAATTGCTATTGGTGCAGCTAAAAAAAACAGTTGTTTTTATTCTTTGATTAAGTCGAATACCATAGTACCCAAAAAGATATCTGATTTGACGGGTTTAACTTCCACGATTTTGTCAGACGAAGGTGTGGATCTTAGAGTGGCACTAGTCCAATTGAAAAAATTTATTGGAAGTCTACCGATAGTAGGTTATAACGTTCATTTTGATGAAGCTTTCTTGGAAAGGGGATATAAAGACATTCAAGAACCTTGTTTATCAAATAAAATAGTTGACTTAATGCCTGTGATTAAAAAGACAAATAAGTTTTTGGATAATTATCGTCTCAAGACGGTTTTAGAAGACTATAAAATTTCAAATCGTCATCCTCATCGTGCGGATTCAGATGCAAAAGCAACACTTGAATTGGCGATACAACTCATAAAAAAACAGAATTTGAACATTTAAAGATGCCGGTCTAACGGGATTAATTTAGT # Right flank : TTGGTTGTTATAGCTTCGTCTTGCACGTCTTAAGTATTCCCCGTACATGAATCAATGTGTCCAAATCTATTGAAGACCGATCAACTGACACCAACACTTGAACTGAAATCGGTCACTGATAAGATGGTTTGTTTAAAGGTAAGTAGGTCATTAGTGAATTTACCATCATGACTTTAGTCGAACGAAAAAGCTGTCATGGGACCATCGATAAAATTTGACAATGACCATGCGGATACTTGCTGTTAAGCACTCAAAAGTATCGTTAAAGACTACAGTTCTAAATTTGCGGACTTGTCAAAAGCAACGGACACAACGACTTATTTTGACCACCCATATTTACCGTGGGAGCGTGAAGTTAATGAAAACTGAAAACAATTTATTCGAGAATTTATTTCCAAAGGCCGTTCCATACGTTAAGTGGCATTGGTTGGAATTCGAGTTTTCCAAGATGTTTCGAATCAACGACCACTCAGTTGTCAATCAGCTATAGATATTCTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //