Array 1 46097-48199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACCM010000035.1 Corynebacterium macginleyi strain 160430 HBRU94_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46097 29 96.6 32 ............................G CCAGCGCCCTTATCGACACCCTGAAAGACGGT 46158 29 100.0 32 ............................. AAGAGAAACATTAGCGTCTAAGCACTAACATC 46219 29 96.6 32 ............................G ACTGCGTTCCGTGTGAAGAATTGGGATAGTGA 46280 29 96.6 32 ............................G TTATCAAGCGAATCATCACCACCACGCGAGCG 46341 29 100.0 32 ............................. CAAACCAACGAAAGGCAAAAACCAAACACAAA 46402 29 100.0 32 ............................. AACTCGCCCCAACCAGAAAAGGAAGAAACCAC 46463 29 96.6 32 ............................G CCGACTGGAACGAAAACGCCCTGAAAAAGGCC 46524 29 96.6 32 ............................G CACGCCGGAGACGAAACCAGCCACCGCGGCAA 46585 29 100.0 32 ............................. CTATTGCCGCTTAACGGGTGCCACACCGCCCC 46646 29 100.0 32 ............................. CGGATTCTAGCCCGAGGTCGCGCACGCGGTTA 46707 29 96.6 32 ............................G CCCGCGAGTGCGGGCATCAGCGCGTAGAATCT 46768 29 100.0 32 ............................. ACGCTTCTAGAACCGTGTCACGCGACTCTAGG 46829 29 100.0 32 ............................. AGCAGTCCGCGAGTCCACCCAGCCTTCACCAA 46890 29 100.0 32 ............................. CCCGGCCCTGATGACACCCACAGGACGCTCCA 46951 29 96.6 32 ............................G GTGAAAAAATCGCAAGGCAGCGAGCAACTATC 47012 29 100.0 32 ............................. CTATTTGCTGGTGGGTTGTACCAACCTCCGTT 47073 29 96.6 32 ............................T CAAAAGAACCCGACTCAGTCTTATCTGCACTG 47134 29 96.6 32 ............................G GCTCGAAAGAAGTGGTTAGAGCAGGTAGAAGC 47195 29 96.6 32 ............................G CTAATCGCTTAAAGTCTCTGCAATAGAACCAG 47256 29 100.0 32 ............................. ACCGACGGCTCGTATTGGCGTTGGCGGAACCG 47317 29 100.0 32 ............................. CGGTATTGATTTGAACTGGCTCGAACATGGCG 47378 29 100.0 32 ............................. GCCTTGCACCTCAAGTACCTCACGCTCGGCTA 47439 29 100.0 32 ............................. AGCTGGGTTTTCAGGCGCTTGGCTCTACACTC 47500 29 96.6 32 ............................G GCGGCACGGTGGTTTATGCCGGTGCCGCAAGT 47561 29 93.1 32 ..........T.................T AATCCACGCAGGAGAGCTGGGCACCATCACCG 47622 29 100.0 32 ............................. ACACCGCAAGGAATAACAGCGGTGTATTTTAG 47683 29 100.0 32 ............................. CGCTGGGAGTGGGGTGCGAAGGTGTGGCCGAC 47744 29 96.6 32 ............................T CGGTCGAGGGTGATTTCAGTGAGAGTGAGAGC 47805 29 96.6 32 ............................G GTCTTGCACTGCGGCGGGGTCATAGTCGATGG 47866 29 100.0 32 ............................. GCCCTGAAAAAGGCTAGGGAATACTCTGATTT 47927 29 100.0 32 ............................. GGAGATACCGATTATGGCGAGGCCAGCGGCGT 47988 29 96.6 32 ............................G TTCAGATTGACACTGAAAGGACCCAGTTATGA 48049 29 96.6 32 ............................G GTGCTTGACCTGGCGGTCATGGACAAAGCGAT 48110 29 96.6 32 ............................G TCCGCGATGACGTATACGGGAACGCCGACATC 48171 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 98.2 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GAGCGAACTTGAAGTCATTGCTTCCGGTCTTAACTGGGCAGAAGAGGACACGCTGTCATGATGGTGCTGGTTGTTACTGCTTGTCCCGCTGGGCTACGGGGCGATCTGTCGAAGTGGCTCATTGAGCTGACCCCTGGTGTATTCGTCGGACGTCCTTCTGCTCGTATTCGTGATTTGCTCTGGGAGCGTACAACCGAGCTTTGTAAAGATGGGCGTGCACTTATGGTGCATTCAGCTGCGAATGAGCAGAGAATGGAGTTCAAAACTCACCGACATCATTGGGAACCCACGGATTTCGACGGGATTACCTTGATGAGGCGGCCGGCTAAGTTTAAGCAAGCACCGCGAAGGACTGGGTGGTCTCAAGCCCGACGTAACCGTAATTCTTATAAGAAACAGAAGGGCAGGTAGTAGGCCGCGCGGAGCTTCGGCAGTAGCTTCCTTAAATTACAAGTTGTACGTAGAATTGACCTAAGGCTCGAATTTCTGCTGTTCAGCAA # Right flank : TAAGCGGGGTAACACGGGCCATGATGAGAGAGGTGAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44-318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACCM010000012.1 Corynebacterium macginleyi strain 160430 HBRU94_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44 29 100.0 32 ............................. TAAGCGGGGTAACACGGGCCATGATGAGAGAG 105 29 93.1 32 ...A........................G TCCGCGATGACGTATACGGGAACGCCGACATC 166 29 96.6 32 ............................G TCCGCGATGACGTATACGGGAACGCCGACATC 227 29 100.0 32 ............................. TAAGCGGGGTAACACGGGCCATGATGAGAGAG 288 29 89.7 0 ...A...................A.T... | A,A [311,316] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GGGATGAGCCGTCCGCGATGACGTATACGGGAACGCCGACATCG # Right flank : CTTGTTTTGGTAGCCCGAATCTACTGCTGGGCTTAGTAATCAAGATATCGGAAGGCCATCCAGCAAACAGGTTCGTCGCTTGACTGATGAGAACGGTATTCATTCCTGCTGATGCTCCACCGTCGGCTGCAGCCGCAGCATTGAACGCCATGTTCGACTGATACTGTCCTATGCCTGTGACACTTGGCTCAAGTAGAAAACCGTGCGACGCAACTTCATCGATGTGAATTTTGGTTCGCGTTTGAGCTAAGCCGAATTGTTCCGGCGGCTCCGTTCGAAGTGAAAAGGCGTGACTAACCAGCAAGAGTTGTTTCTCGTAGGACCGAGAATTGGTCTTTCGCGAGCAATTGACTAGTCTTTTGAGAGCGGGATGTCGTAGTCTACGACATGAATCCCGCGTGGGGCTATAGCTCAGTCGGTTAGAGCTCCGGACTCATAATCCGTCGGTCCCGGGTTCGAGCCCCGGTGGCCCCACGGTAGAAGGAGGCGTCGGCAAGCAG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //