Array 1 166622-164958 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVX01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-029 NODE_10_length_175505_cov_25.3487, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166621 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 166560 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 166499 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 166438 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 166371 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 166310 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 166249 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 166188 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 166127 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166066 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166005 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165944 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165883 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165822 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165761 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 165700 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165639 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165578 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165517 29 96.6 74 ................G............ AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165414 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165353 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165292 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165231 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165170 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165109 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165048 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164987 29 96.6 0 A............................ | A [164960] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 104321-105263 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVX01000018.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-029 NODE_18_length_112480_cov_26.0647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104321 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 104382 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 104443 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 104504 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 104565 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 104626 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 104687 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 104748 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 104809 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 104870 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 104931 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 104992 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 105053 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 105114 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 105175 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 105236 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //