Array 1 33332-34756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWDS010000002.1 Lactiplantibacillus pentosus strain 7.2.11 assembly_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 33332 29 100.0 32 ............................. AACACCGGCGACAATATTACTAGCGTTAATAT 33393 29 100.0 32 ............................. TTCATGAACCAGCGCATGGCTAGTATGACGGC 33454 29 100.0 32 ............................. ATAATATGCATAGGCACGGGCTTCGTTATCTA 33515 29 96.6 32 ............................C CTTGTTAAAACGGTTAAAGACTAAACGTGCAA 33576 29 100.0 32 ............................. ATATGGTTTCTTCCTACGGGAAAGTTAAATCA 33637 29 100.0 32 ............................. CAGTAACTAATGGCGACAATCAAGTTACAGTA 33698 29 100.0 32 ............................. TGCGATTGGGTTGATTAACCATGTATCTAATA 33759 29 100.0 32 ............................. ATATTATAACACATAACATCATCAATGCAATT 33820 29 100.0 32 ............................. TAACAATGTGAGTTGTTGTATTGTGAATGAAA 33881 29 96.6 32 ............................C TTGCATCCGCCGTCAACTTGGTAATAAAATCA 33942 29 100.0 32 ............................. TATATCGATTTGGTGGCTTTATTTTCAAAGCT 34003 29 100.0 32 ............................. ACAACAAGTATTGCGCGCCGTCACCGCCGACC 34064 29 96.6 32 ............................C GAATTAATTTGAAATCCATCTTGCTCACGATC 34125 29 100.0 32 ............................. CTGGAGGGCAATGGACTGGAAAAACGTTACGG 34186 29 100.0 32 ............................. AACGACAATGCAGACCAAACCAATCAGACTGT 34247 29 93.1 32 ..G.........................C AGCACATTGATGGATGTGCAAACAGCGGTTCA 34308 29 100.0 32 ............................. GACGCTATGAAAATCTTAGCTTATGACAATTA 34369 29 89.7 32 ..G....................A....C ATTGCACATGTGGCCAAAACGTCGACGCCGTA 34430 29 82.8 34 ..G............A..A..A...C... TAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 34493 29 89.7 33 ..G........A...A............. TAACACGCCGGTAGTCCCGTTTTTGGGGGATTG 34555 29 82.8 32 ..G...T........A.....C......C ATGACTGCGCACTATACTGAGTCAGCCCGACT 34616 29 75.9 32 ..T.....T......A.A..A.....T.G AGGTGCACTCTCGTGAGAAGCGTAGACGCTAG 34677 29 82.8 22 ..G...TT...........A...C..... CGCTGAATCGATATCCACCATT Deletion [34728] 34728 28 82.8 0 T..............A......A.-..T. | C [34749] ========== ====== ====== ====== ============================= ================================== ================== 24 29 94.6 32 CTATTCCCCGTGTATGCGGGGGTGATCCT # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCACACTAATTTTCGCCACAGCGCTAGTAACTGGAACACCAGCGATAAACGCTTGTACGGCGTGAAACATATGGCTAGTCTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGAATGCTCCCCCAAAAAACATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGCAGCAAGCTATTGGATTGATTTTTTAAAATTCCGGATATAGTTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAACAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATAACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCAGCATTTATACAGAGCGATCAACAACATCACTTCATCAACAGGGCAATTTGACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTTCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTGAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGCCGATAGTTATCTAAAAACGCATTAGTACGCTTCACAATTGGCATCAAATCCATGGTTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37374-39780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWDS010000002.1 Lactiplantibacillus pentosus strain 7.2.11 assembly_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37374 28 100.0 33 ............................ TTATTGGAGGATAAGAAATGAGCAAATTGGATA 37435 28 100.0 33 ............................ TAACTGGCGAAAGGCCAACAAAACCACGAATAA 37496 28 100.0 33 ............................ TGTAGTATAATGAATTAAAGCCTGCCAGTGTAT 37557 28 100.0 33 ............................ CGTTGCTCGTGTATTTACTGGCATCAATATTGC 37618 28 100.0 33 ............................ TGTCGATATTGTTACGCATGTAACCAGTATCAA 37679 28 100.0 33 ............................ CTAATAAAACTTACTTTTCGGCAAATCCTGAAC 37740 28 100.0 33 ............................ TTAGTAATGACGAAGACAAAGAATACAAAGGTG 37801 28 100.0 33 ............................ CAGTATGCTATGGCGTTTAAAGAAGCTGGAGTT 37862 28 100.0 33 ............................ TAAAAATTGGCGTGATAAGCAGATTGACAGTAT 37923 28 100.0 33 ............................ CCACAAAGCGTTCGGATTACCAATTACAGCCGA 37984 28 100.0 33 ............................ CACTCTGTTCTGTTGGTAACTTATGGAATCTGT 38045 28 100.0 33 ............................ CGAATTGGCGGAGCTATGCAAAAAATCGGTAAA 38106 28 100.0 33 ............................ CTTAAGTGACCTACACATTGGAGAATTAGACGA 38167 28 100.0 33 ............................ CTATCAAGTAAGATGTCGTATGTTCTAATTGCC 38228 28 100.0 33 ............................ CGCAGCTAAAGATATTTTAGACCGCTCAATGAG 38289 28 100.0 33 ............................ TAATAGGACTTGGTTGGGATCAAGCAACTGCCA 38350 28 100.0 33 ............................ CAATCATAGCCGCAAACGACGCTACTAATGCTG 38411 28 100.0 33 ............................ TAAACAGATGGGGTAGAGCCGGCTGTGTTCCAT 38472 28 100.0 33 ............................ TATAGGAAGGAAGAAAATAATGAATAATATTTC 38533 28 100.0 33 ............................ TACAATATAACCATTTTCTGCCAATGCGACACG 38594 28 100.0 33 ............................ TAGGTATTTGTCGGGAGACATAGTCGATCGCCA 38655 28 100.0 33 ............................ TCAATCAGCTAAGGTAATCTCACAACAAGTCGC 38716 28 100.0 33 ............................ CCAAACACAAGCAGGCTAATTTGATTTATCAGG 38777 28 100.0 33 ............................ TTAAAGACGAGCTACCACTGGTTGTAGACACGT 38838 28 100.0 33 ............................ CAGGTTAAACGCAGTTAACCGTGTATATCCATT 38899 28 100.0 33 ............................ TAGTGACCCGATGGATAACCGGGCTTGTAACTT 38960 28 100.0 33 ............................ TCTGACTAGCCGTCTGTGTTTGATAAGTTGAAA 39021 28 100.0 33 ............................ TTTCATAACTGTACCTAACCTTTCTTTACTATG 39082 28 100.0 33 ............................ CCATATGCGAATAATCCACGGAAAAACGATGAA 39143 28 100.0 33 ............................ TAAAATAGCCAATTTGCTGTTTCGTAATTCAGC 39204 28 100.0 33 ............................ TAATGACATCATATAGTTTTACGAGAATTTCAA 39265 28 100.0 33 ............................ TATGACGCTGACGAGGGTATTGGTTATCCGATT 39326 28 100.0 33 ............................ TAGCAATGCAAACGCTTAGGGATTATGCGGTCG 39387 28 100.0 33 ............................ CGTTAACAGCGTCATTATTACTAACACTCACGC 39448 28 100.0 33 ............................ TAGTTGCAAATGTACTGTCCTTTTGAGTAGTTG 39509 28 100.0 33 ............................ TATAATTCGTGCACTAACGAATATTGGCGTGAC 39570 28 100.0 33 ............................ CGACCAGTTATACTATCTATCCGTTTTAGATGA 39631 28 92.9 33 ............C..A............ TATGAATTGGTACAACCGCGACGAAATTCCATT 39692 28 85.7 33 ..A.......T.C..A............ TCCAATGTGACTAACTGAAATTTCTACGCTAGT 39753 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.9 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGCTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTTGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATAGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2497-1247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWDS010000027.1 Lactiplantibacillus pentosus strain 7.2.11 assembly_contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2496 28 100.0 33 ............................ TTACGCTATGCACAATCACGATCAATCAATTGT 2435 28 100.0 33 ............................ TTAAGAAAGGCAATCGAGCTGTAGGCTACCTTA 2374 28 100.0 33 ............................ CGGCCAATCGTTTGTCAACGATAACACGCCATA 2313 28 100.0 33 ............................ CATTAATGGACGTAGTAATAATTCTGAGTCAGG 2252 28 100.0 33 ............................ CGTACTGTAAGATCCGTCGAAACTAATAACGAG 2191 28 100.0 33 ............................ CCGAAGATGACGATTAAGAAAATGCAAAGAGAA 2130 28 100.0 33 ............................ CGTTTTGTATGCCGCCTGTGTCAATCGCAACAT 2069 28 100.0 33 ............................ TGGTAATCCCGCGGAATGACAACATGCCGTTTG 2008 28 100.0 33 ............................ CGACTATAGAAGCCATTGAAGGCCTGTTAGATA 1947 28 100.0 33 ............................ TATTCCTCAAACCACTTATGCTAGCCAAGTTAA 1886 28 100.0 33 ............................ CACCAGAACCAAATCTGTTGAAATATGCCTTTC 1825 28 100.0 33 ............................ CAAATGATAATTTAAGCGATAAGTAGGCTAGCG 1764 28 96.4 33 ........T................... CCGATAGTATTCTTGCGCTTCCAGTAAGCTAGT 1703 28 96.4 33 ..........C................. TAAAATTCCCAGGGATCATCGATAACGTCCGCC 1642 28 96.4 33 ..........C................. CTGGTTCTCACGCCAATCTCCATCACGATGCAT 1581 28 100.0 33 ............................ CTTGAATGCAAGAAGGAGGTAGCTGACAGTGGA 1520 28 100.0 33 ............................ TTACATTGGACTTCGCATCGTTGGTCTTGTCAT 1459 28 92.9 33 ..........C.......A......... TGGTTTAAAGATTCGAACGGAAATTTAGACTTT 1398 28 89.3 34 ........T.C..........A...... TGGCTTTTGTCAGCGCTTCTTCGCAGAACACTTG 1336 28 92.9 34 ..........C......A.......... CCTATTTCCACAATCAAATTCATCTACTAGATGA 1274 28 92.9 0 ..........C....T............ | ========== ====== ====== ====== ============================ ================================== ================== 21 28 98.0 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACTAGTTGTGGCTCAGACGGCAATTCTGGCAGAAGGTGCAGCTGTCACACGAACAGACATTGAATTTTTGGCGAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTCGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAGTAAAACATAAAACATTATTATCTTAGACCACTTAAATCTGCGCAGGTGTCCTACAACAAATCAGCTGGTTCCGGTTAAAATTAATGTTCATGCAGCAACCACCCCTCTCCAACACACACAGAATATTCAGAAAGTACGGCTCTTGTCGTACCCACCGCTCACAGTCATTCGCAAACTCGGCGCAAGGTAAATTAATTAGAATCCAGAGCAAAAAAAGCCGCCATATCCAAAGATATGACGACTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATTTAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //