Array 1 11539-8926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNW010000015.1 Ligilactobacillus animalis strain N71 No.71_ctg015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11538 36 100.0 30 .................................... GCTTAGGCAGAAAGTTCAGTCATTCCAGCT 11472 36 100.0 30 .................................... TGTAACACCCAACCGTTCAGCCATCTCGCT 11406 36 100.0 30 .................................... TGAAGGTATGTACGACAGCTTAGGCAATTT 11340 36 100.0 30 .................................... TTAGGCGTTACAGTTGGTACGCTTCAGGCG 11274 36 100.0 30 .................................... CTGCATAGTGGTAATACACGCTTATTTGTA 11208 36 100.0 30 .................................... TCAAAAGCGTATCGGTACAATTCACGTTGC 11142 36 100.0 30 .................................... AAAAAGGCCGTGAATATCTAGCAACGCAAA 11076 36 100.0 30 .................................... ACAACCGCCACAGCCACAGCCTACGCATAT 11010 36 100.0 30 .................................... AACAACAGTATCGCACTTGCAAAGCGTAAA 10944 36 100.0 30 .................................... AGCGGTTTAAGCACTGTGATAACTTCGGTA 10878 36 100.0 30 .................................... ATGGTTGGCAAAGGGATGCAACCAAGAAAA 10812 36 100.0 30 .................................... TTGTCCAATAGCGAAGTAGTCACCACCGTA 10746 36 100.0 30 .................................... CAAAGCTGAAATCAAGAAGGCGATCAACGA 10680 36 100.0 30 .................................... AATGGGCGGCAATGTGTCTCAAATGCGGGC 10614 36 100.0 30 .................................... TATAGGATACTGTTGTTGGTTTTTGCTTGT 10548 36 100.0 30 .................................... TGTGGATAACCAAAGACGCCATTTGCGCCT 10482 36 100.0 30 .................................... AAAAATAATAGCTTTGCAAAACTACATGAA 10416 36 100.0 30 .................................... CCAGTCTGTTTAGCCGTGATGTTCCCGCTT 10350 36 100.0 30 .................................... GAAGCAAAGGCAGAAAGTGAAGCAAGGTAT 10284 36 100.0 30 .................................... TATATCAATGGCATTATAATTATCAAACTT 10218 36 100.0 30 .................................... GAAAGCAACTACATTACTGTCCTGTTCAAT 10152 36 100.0 30 .................................... TCAGATGGTACAGGCATGTATGCACCTACT 10086 36 100.0 30 .................................... TCATACTCTAACAATTCTTGCTTGAATTTC 10020 36 100.0 30 .................................... CGTGAGGAGACAGAGCCTAAGCTTGATACT 9954 36 100.0 30 .................................... ATGATATAAGGCCTTTTGGTACGCCAAACA 9888 36 100.0 30 .................................... AAAACCACAACCGCCACAGCCTACGCATAT 9822 36 100.0 30 .................................... ATACGCCGTCTACCTTATAACCTTGCCTTA 9756 36 100.0 30 .................................... AACGTGTGCAAAACGCTTTGACAAGAGCTA 9690 36 100.0 30 .................................... AGGCTCTAAAAGATCCATTAGGTGTCTTGA 9624 36 100.0 30 .................................... TGGTTGGCAAAGGGATGCAACCAAGAAAAA 9558 36 100.0 30 .................................... CTTTACCGTTCAGATAGCGCTGATAGTGTA 9492 36 100.0 30 .................................... CCTACACGGACACTATCGATGCCTTGCAGC 9426 36 100.0 30 .................................... CATGGAGAACTTGCAAAAATGCATTAACGC 9360 36 100.0 30 .................................... CTAGCTTGCTAAAGATGAATGCGCCCCGAT 9294 36 100.0 30 .................................... AACTTCCGAAGCCGTGATCAATGTTTGACC 9228 36 100.0 30 .................................... TGATGCCAGCAGGAAAACCTAACTTATTTA 9162 36 100.0 30 .................................... GCGCCATTTGCTGGTTGGATCGTTTCAATA 9096 36 100.0 30 .................................... AGTGAGCTGAGTGAAGTGGACTAAGCAAGC 9030 36 100.0 30 .................................... TATTGAGATAAAATATAACGAAGTAAGTAA 8964 36 97.2 0 ...................................A | G,TT [8929,8932] ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.9 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : TATTCGTCTAATTCCATTGTTTTGATCCGGTCAAGTGGCCATTCTTTCAAAAATTCTTTTGCCAACTGCATATTTTGTTTCTTCCACGCCTCTGCTCGTTTTAACAGTGCTGATTTATTTTCAAAATACCAATCCGAAAAGTGTTTTATATCGATTTTTACCATCCTGTCACCCCATCGTTTTTATATAGCATACAATAAGCTTAGTAGCCGATGCACCTAAAACGCATATAAATTTAGACAAAAAAGTTCCATTAGAAAATTTTTCTAATTTCTTAAAAAGCATCTCAATAGTTAGATAGTGACTCTAACAATTGAGATGCTTCATATTAATCTAGTACTGAAAATTTTAGACAGTTATATTTTTGCTTAACGTAGTGTATAATTATAATTGAATTGTGTATTACGTTAATGAAAAAACATGGAATCATACAAAACTGAAATCTTGCTAGGATAAGTAGCGCGATTACGAAACCAAAACGACATTTTTTTGCATTTGAG # Right flank : TCACCGCAATAAGGCCCTGACTAATGTAATTTTCTGAATTACATCTCAAAAGCCCTAATATGAGATGTATTTATTAAAGAATCGCTGTAATACTAGCTCAGGCATCAGCTAACATTACAGCGATTCTTTGTTTATGTACTATAACAATAGTAATTTTCTTTTTTCACAAAAATCCATTATTTTCTATCAATATATTAAATCATTCTAAATGATTCGCTTTAAAAAGTAATATCAGACCTTCGAAAAAATGAATTACTCATCTGCTCCCTCATGTCCCAATTATCACTCTTCAAAAAATCTTCTTGCTTCTTCAGGGTTTTTGATCATCCAAACAAAACCAAGTACAACAAGATATGAGCATAATGCTGGTAAGAATAAAAATATATCTATATTCTCCCAAACACCTATCAAAACTGCGGCTATAAATAATTTTAACTCTCTCAAAATGCACCTTCACCTATAATAATTTTTATCGTACTTACATTGACAATCCAGCCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 20995-21624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNW010000015.1 Ligilactobacillus animalis strain N71 No.71_ctg015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20995 36 100.0 30 .................................... TGGAGAACTTGCAACAATGTATTGCAAATG 21061 36 100.0 30 .................................... TCAAACCGCAACGTTTTATAGCCGTCGATA 21127 36 100.0 30 .................................... CTGGAAAGAAATTGAACCAATTGTCAAATC 21193 36 100.0 30 .................................... AGCACGCAAACGCCACTCTAAGATACTGTC 21259 36 100.0 30 .................................... CCTGACGGTTATTGTTTGAACCTTCGTAAA 21325 36 100.0 30 .................................... ACCGATTTCGTAACTTTCTAGTGTCTTTGC 21391 36 97.2 30 ..............T..................... AATCAATATCCATTTGATCGCTCTCCCTTG 21457 36 97.2 30 ..............T..................... AAGCTGAGCTATCTGTTGAGTGTGAAAATC 21523 36 97.2 30 ..............T..................... ATCGAATTTATGAATAGTTACGGCGATAAG 21589 36 77.8 0 ..............T.........AA...TT.GT.T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 96.9 30 GTTTTAGAGCTATGCTGTTTTGTATGACTCCAAAAC # Left flank : TGCGGATCTGGAAAGACAATTTGGTGAAAAAGAGGAAGTTAAAGCCAGACTTGAGTTATTAGCAGTGGAGATAGCAAATATTATTTCGAGTGAATGTTTAGAAAATGAGTTAGATCTTGAGTATGATGAGATCACACTGCTAGAATTGATAAAGGCGATGGGTGTAAAAATCGAAACGACGATGTCATCGGTTTACGAAAAATGTTATGAGATAGTGCAAATTTTCAAATACTTAAGTAAGAAAAAATTATTAGTTTTCTTAAATGTTGGTGCTTATTTGACAGAAAAACAAATAAGAAGCTTACTTGAGTACATTGAACTGTGCAATTTGAATGTCATATTCCTTGAGCCAAGTAAGTTGTATGACTTACCACAGTATATTTTAGATAGTGATTATTATTTAGAGTATTTGAATAGCTCTTCGGAGTCATAGAAAGCGAAAATTTTGCTAGAATTAGTAGCACGATTACGAAACCACTGTGCCATTTTTTGCATTTAGG # Right flank : TTTTCCGGTTGAGAATATGTGCAATTGAAAAATATTTTTACAGTATTTCTATTGACGTCAACTTTATAATTTGATATTATATTAGCGTTGTATTTGTGCATGCCACAACTGCAACCGCACGTTTTAAGTTCAAGTGCTCTCTGAGCCACTACATTACGGCGAGTCTAAGTAAAATACAAGGAGGTGCACATTAATGTACGCAATTATTGAAACAGGTGGTAAGCAACTTAAAGTAGAAGCTGGTCAAGCTATCTACGTTGAAAAGTTGGCTGCTGAAGCTGGTGAAAAAGTAACTTTTGATAAAGTTGTTTTAGTAGGCGGCGAAAACACAGTGATCGGTACACCTTTTGTTGAAGGTGCTACTGTTGAAGGTACTGTTGAAAAGCAAGGTCGTGCTAAGAAAGTTGTTACTTTCAAGTACAAGCCTAAGAAGCATCAACACACAAAGCAAGGTCATCGTCAACCATACACAAAGGTTGTTATCGACGCAATCAACGCAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGTATGACTCCAAAAC # Alternate repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //