Array 1 44-499 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZM01000048.1 Salmonella enterica subsp. enterica serovar Braenderup str. ATCC BAA-664 SEEBA664_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 105 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 166 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 227 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 288 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 349 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 410 28 96.6 33 ..........-.................. GGGGCTAGTTGAGGTTTGCCAGCACAACCTGTC 471 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GGGATAAACCGGGGCTATATCCACGCCAAAGGGCCGCGCGACAG # Right flank : TTCCACGCGTCGTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107431-106302 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZM01000044.1 Salmonella enterica subsp. enterica serovar Braenderup str. ATCC BAA-664 SEEBA664_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107430 29 96.6 32 .............T............... TGCGATCTAATCTCCTCTGGCGTGACTGTACG 107369 29 96.6 33 .............T............... TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 107307 29 96.6 32 .............T............... CGCTGAATTCCGATATTCCGCCGTATTGCACG 107246 29 93.1 32 .............T..............T TTACGCAATATTAACAGACCAGGGAGCAGCGC 107185 29 96.6 32 .............T............... GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 107124 29 96.6 32 .............T............... CTCATTTGCCTTGCTTGATGACCACTGCGGTA 107063 29 96.6 32 .............T............... TCATCGAGTACGGAAAATCCGTTTTTATTGTA 107002 29 100.0 32 ............................. CTACGAAGGCGTCTTTATGGCGCACAGTACCA 106941 29 100.0 32 ............................. CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 106880 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 106819 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 106758 29 100.0 32 ............................. CCTGGCAAATTATTTCCTGGATACTCGATATC 106697 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 106636 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 106575 29 100.0 32 ............................. CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 106514 29 100.0 32 ............................. GGGATTATGTCCTCTAAAGACTGGCTAATCAC 106453 29 96.6 32 .........................G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 106392 29 93.1 32 ..C..........T............... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106331 29 93.1 0 A...........T................ | A [106304] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAACCGCAGAACCTGGCTGATGAGGAACTTTCAATCTG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20-901 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZM01000010.1 Salmonella enterica subsp. enterica serovar Braenderup str. ATCC BAA-664 SEEBA664_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 81 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 142 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 203 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 264 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 325 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 386 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 447 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 508 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 569 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 630 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 691 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 752 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 813 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 874 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAACATCTAAAAATACATGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17159-17493 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZM01000010.1 Salmonella enterica subsp. enterica serovar Braenderup str. ATCC BAA-664 SEEBA664_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17159 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 17220 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 17281 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 17342 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 17404 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 17465 28 96.6 0 ............................- | G [17482] ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //