Array 1 3714-2966 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXS01000044.1 Pseudoalteromonas luteoviolacea NCIMB 1944 contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3713 28 100.0 32 ............................ TTTTGGCCAGCGAACTCGGCCATGAACCCATG 3653 28 100.0 32 ............................ TCCATCCGTCCAGTTATTTAATAAAGGGGTGA 3593 28 100.0 32 ............................ TTTAACAGACTTTTGGCAACCGACAGCGGCTG 3533 28 100.0 32 ............................ CAACGTCAAATGTGCATGGTAACCTTTCAGCA 3473 28 100.0 32 ............................ TTAAGTTGTGTAGTATCAATCATTTACTACAC 3413 28 100.0 32 ............................ ATCAACCTCAAGTGAAGCGCCGTTGTTGTTTA 3353 28 100.0 32 ............................ ACACCGACTCGCATGCTTCAAGCATTGATGTC 3293 28 100.0 32 ............................ GATCATCTTAGAAGAAAAAACAATTGAGTCAG 3233 28 100.0 32 ............................ GTTGAGCAACCCATTAAAACCGAACCAGAGGT 3173 28 96.4 32 .................T.......... TAGAGATAACGCGCTGGCCGTGGTTGCAATGC 3113 28 100.0 32 ............................ TAACAACATACAATTAGATTTATTGGGGCTTT 3053 28 96.4 32 .............C.............. TCACTACGGTTCCTCTGGTATATGCAAAGGCT 2993 28 89.3 0 C...........GC.............. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCTTAGAAAATTAACGGGTAACAGGGGTTAGAAATGAGTAAGTTCACTGCCGTACAGGCAGCTTAGAAATGTTATCCATGAACGACTTACGAGAACGTGATCTTCACTGCCGTACAGGCAGCTTAGAAAACTTTGTGGTCGAAACCTAGTACAATGAAAATGTTTACAGCCATGTAGGTAGTTATGAAACTGCAAAATTGGATCCTGATTTTCATCAGGATGACGGTGAGCAGCGTGATATTTAGGGTACTGCTGGTCAAATGCAACGGGTAAATTGTTCAAATAAAAGTTACATGTAGCAATGTTAAATGCATTGAAAAGACGGGAAAGAGCGCGTGTCTCATTTTTAATCAATAAAAGGGAGTTTTCCCCTTTATTTTTGACCTTTTAAAATTTACTTATAATACAAATAGTTGTGATTGGCTGTTTTTAACAAGGTAAAAATAGATTGTTTACCTTAATAGTCTGTTGCAACTTATCTTTTTTCATTTATCTTATA # Right flank : TCAATAAAAAAATAGTCGCACAAACAGGATGGAGCTTGACCTTCGTCAGGATGAAGGGGGTTGTAAATACGTAGTTGCAGTGTTGAAGTGTATCCGAACCGTCTTCCCGAGCTTGCCTCGGGATCCATATTCAAGGGCGCAGAAAGCCTGATGATATAGGGCGAGATGGATCCTGACTTTCGTCAGGATGACGGCTGGGCTGGCGAGTTTGATGGAATTGGGTGAGATGGATCCTGACCTTCGTCAGGATGATATCGACGTGGTTGGTGGTATTTGGCATCATGGCTCCCGACGTTTATCAATGTGGCGTCGAGCATTGCGTGTTTTACACTTTTAAACCTTTATTGCTTTTTAACTCCTTCTTTGGCTAACAAGGCTTTTTTTCGTTCTAACCCCCACCTGTAGCCGCCTAAAGTACCATCGCTGCGCAATACTCGGTGGCAGGGGATCAATATGCCAATACGGTTTTTACCACAGGCTGTGCCAACGGCTCGAACCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5193-4024 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXS01000044.1 Pseudoalteromonas luteoviolacea NCIMB 1944 contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5192 28 100.0 32 ............................ TTGGGTATTTGGAGTCATCTGGTGATGGTTTT 5132 28 100.0 32 ............................ TTGGGCTTTTAGCTTTTCTTCGTGTCGTTTCT 5072 28 100.0 32 ............................ ATGGGGTTAGTACGCGAAGGCGTCAGCCCGTA 5012 28 100.0 32 ............................ AAGAGGCATTAACTTACCAGCCAAGAACTGAA 4952 28 100.0 33 ............................ TCACTCTTGGATATGACGCCAAGCTTGAAGACC 4891 28 100.0 32 ............................ TCTAATTATTGGTTCTTACGAGGAAAATAATG 4831 28 100.0 32 ............................ TCCTTGTGACGATTGTCACCCCCTGAGAATCT 4771 28 100.0 32 ............................ TCAAGCTTTTTGAGTTGGTTTGCGCCAAGAGA 4711 28 100.0 32 ............................ GACTGATAGCGTTACAGTTGAAGTCGGTGTCG 4651 28 100.0 32 ............................ GCAGATAACGCAAGGGCCACGCCGACAGGTTT 4591 28 100.0 32 ............................ TGAATTTATCACTGCGGGTGTGTCTGTTTTTA 4531 28 100.0 32 ............................ GATGACTTTGTTATAACCCCATCTTGCAACAC 4471 28 100.0 32 ............................ AATGTGTACGGTCCCGGGGTTAGCACTGATAT 4411 28 100.0 32 ............................ TAGCTTATGAGCTAAGCAAATTAAACAAAAAA 4351 28 100.0 32 ............................ GATACAATCATCCCTGCGGTCGGCGCAAAGGT 4291 28 100.0 32 ............................ AGGTGTTGGCCCTGTTATACCAAGGTCTATTG 4231 28 100.0 32 ............................ ATTAACGGGTAACAGGGGTTAGAAATGAGTAA 4171 28 100.0 32 ............................ TGTTATCCATGAACGACTTACGAGAACGTGAT 4111 28 96.4 32 C........................... ACTTTGTGGTCGAAACCTAGTACAATGAAAAT 4051 27 75.0 0 ...T..A...A.GT...T..-....... | T [4028] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGGGTTAGTGGGTTACTGTGATGTGAGTGATATCCAAGCTGTACCGAGTGGGTGTGAATACCGAGTCGTTTCGCGAATTCAAAGCACCATGTCTCAGTCAAAATTGAAACGCCTAATTAAGCGAGGTTCTATTAGTGATGAACAGGTGAAAAGCTATAAAGCTAAAATGTTTACTAAAGGGCTCGATAACCCATATTTTGAACTTGAAAGTGGTTCAAATGGGCATAAGCATCGTCGTTATCTGCAATTTAGTGAAATAAAAAAAGCACCAGTGCAAGGCTATTTTGATCAATTCGGTTTAAGTAAAACGGCTACGGTTCCGTGGTTTTAAAAAACCGAATGTAAGAAAGTGATAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTTAAAATATGTATAAAATACAAATAGTTGTGATAGGCTGTTTTTAATAAGGTAAAAATAGGTTTTTTGCCTTATTAGCTTGTTGCAACTTATCTTTTTTCATTTATCTTATA # Right flank : CTGCAAAATTGGATCCTGATTTTCATCAGGATGACGGTGAGCAGCGTGATATTTAGGGTACTGCTGGTCAAATGCAACGGGTAAATTGTTCAAATAAAAGTTACATGTAGCAATGTTAAATGCATTGAAAAGACGGGAAAGAGCGCGTGTCTCATTTTTAATCAATAAAAGGGAGTTTTCCCCTTTATTTTTGACCTTTTAAAATTTACTTATAATACAAATAGTTGTGATTGGCTGTTTTTAACAAGGTAAAAATAGATTGTTTACCTTAATAGTCTGTTGCAACTTATCTTTTTTCATTTATCTTATAGTTCACTGCCGTATAGGCAGCTTAGAAATTTTGGCCAGCGAACTCGGCCATGAACCCATGGTTCACTGCCGTATAGGCAGCTTAGAAATCCATCCGTCCAGTTATTTAATAAAGGGGTGAGTTCACTGCCGTATAGGCAGCTTAGAAATTTAACAGACTTTTGGCAACCGACAGCGGCTGGTTCACTGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 14011-13053 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXS01000044.1 Pseudoalteromonas luteoviolacea NCIMB 1944 contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================= ================== 14010 28 100.0 32 ............................ TTGAGTGGATCCAAGGCGAAGATAATCCGTTT 13950 28 100.0 32 ............................ TATGTCCGATTTATTTAATGTGAGTAAAAAGT 13890 28 100.0 33 ............................ CCAAAATCCGCGTAAATCGCCGCCTTAAATTTG 13829 28 100.0 32 ............................ TTTATCTAGACAATTGGCTGCGTTGCAGAGCA 13769 28 100.0 32 ............................ TACCCCATAAGTGCATTTGTACAGTAGTGCCT 13709 28 100.0 32 ............................ TGAAAGCAAGGCTGAAAATAAGCCAGACCCCA 13649 28 100.0 32 ............................ TCTGACAGCTAATTTGGCAATCAAAATTTTGA 13589 28 100.0 32 ............................ TCTGACAGCTAATTTGGCAATCAAAATTTTGA 13529 28 100.0 32 ............................ GTTGTTACATACGTTTTTGTGTTTTTGCTCAA 13469 28 100.0 32 ............................ GATGATGTGCGTCCTCTAACAGATCATGTGAG 13409 28 100.0 32 ............................ AAGTCGCTACCAATCGTACGCAATACAATACC 13349 28 100.0 32 ............................ TGATGACCTTGAGTTGCACAACATGTTGCAAG 13289 28 96.4 32 ..................T......... TGAATAATCTTTGTATATCGAGCCAACTATAT 13229 28 89.3 121 ..........A...............TG ATGAGTGACCGAAACGAAGTTTCGTAGCGCAAGGCATGAGTCGCTTAGAATAAGGTCATGGATGGCCAATGTGACCAAGCTCCATGGATGGATTTCAGCTCTGTGTTAGCTACATACTTCG 13080 28 71.4 0 C.....A...A.T..C.....C....TG | ========== ====== ====== ====== ============================ ========================================================================================================================= ================== 15 28 97.1 38 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAAGGCGGTTTTGCGCCTCAACAATCCCAAACTTCACTGCCGCATAGGCAGCTTAGAGATTTATATCAAACAATCGCAGAACAATGCGAAACTTCACTGCCGAATAGGCGGCTTAGAAAACCTTGTGGTCGAAACCTAGTGCAATGAAAATGTTCACAGCCATGTAGGTAGTTACGAAACTGCAAAAGTTGGATCCTGATTTTCATCAGGATGACGGTGAGCAGCGTGGTATTTAGGGTACTGCTGGTCAAATGCAACGGGTAAATTGTTCAAATAAAATCTACATGTAACAATGTTAAATGCATTGAAAAGACCGAAAAGACCGAAAAGAGCGTGTGTCTCATTTTTAATCAATTAAAGAGGAGTTTTACCTTCTATTTTTGCTCTTTTAAAATTTTTATAGAATACAAAGAGTTAAAATTATATGTTTTTAACAAGGTAAAAATGGGCTTTTTACCTTGTTAGTTTGTTGCAACTTATCTTTTTTCATTTATCTTATA # Right flank : AGGGAAATCTCGAAGCCTCCAAGCAAATGGATACTGACAGCCGTCATTCCGAGCTTGCCTCGGAATCCATGTTTTAAAGACTATTTAGGTGAGCAAAAATAACAGCGAATAAATAAGTGGTACTTTCGGCATTGCATTACTTTTGCTGAGCTAAGGTTGTGTGTTTGAACATCATCTTGTCGCTGATCAATGACTTTCATATTTTCATTTGATACATTTATTTCACGTTAAGTTTACTAAAAGTGGCATATGCAAGCTAAGGAAGAGCAATACTTTAGATATATTGAGGCGGTGTTGTTTTGGCAAGGTGAGATCCAAACAGGTACGTTTCAAGATAAATTTAAACTATCCAGACCCAGTGCAAGACGTTATCTAAATGACTTTATAGCGCGTTATCAAATCGATGCAAATTACAGCGAGTCGGAAAAAGCCTATGTATTGGCAACCCCCTTTACACCGAATTATATTTCCCAAGACTTTACCGAATATGCCAACTTAAT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 15200-14332 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXS01000044.1 Pseudoalteromonas luteoviolacea NCIMB 1944 contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15199 28 100.0 32 ............................ CTTATATATCTCCTCATATGTAACATAAGCCA 15139 28 100.0 32 ............................ ATCTTCACCGTCTTCGCCTTTATCACCATCTT 15079 28 100.0 32 ............................ AAGAACTGGTTCGTTAGTGCCTTGCTTATAAA 15019 28 100.0 32 ............................ ATTGATTGCACTTTGTCTGTGAGCGCTTCAAT 14959 28 100.0 32 ............................ AGTTTCGCTGTAACCAACTTTCGCCCTTGGCC 14899 28 100.0 32 ............................ ATTGGGCGAGCGACAACCGTCGAACCATCGAC 14839 28 100.0 32 ............................ GGTAAAAGCATGGGCCAGCACGTGGGCTATTC 14779 28 96.4 32 ...........C................ GACGGCTGGCAGGAACCTCAACGACTATCAGA 14719 28 96.4 32 ...........C................ ATCAATATATTGAACTAGGCAATGCATGCCCG 14659 28 96.4 32 ...........C................ TTTGTGCTGCTTTTTTCGTTCAGCGCATTTGC 14599 28 100.0 32 ............................ AGTAATTAACGACTGCGGTAATGCCACCAAAA 14539 28 100.0 32 ............................ ACAAGGCGGTTTTGCGCCTCAACAATCCCAAA 14479 28 92.9 32 ...........C..............G. TTTATATCAAACAATCGCAGAACAATGCGAAA 14419 28 96.4 32 ..................G......... ACCTTGTGGTCGAAACCTAGTGCAATGAAAAT 14359 27 75.0 0 G.....A...ATG....T..-....... | C [14336] ========== ====== ====== ====== ============================ ================================ ================== 15 28 96.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : GCCGCAGATACTCAAGCGGCAACTCCAAGTCAAACGGCCACTATTGATGGGATAACATCGGCAACTTATACGGCTAACACAAACATTTTGGGCCTGTTAACTCCTTCAAATGCCTGTACAGATAGATGTCAATATGAGTATGAAGCCTGTGTTAAATGGGCACCACCTTGGAAAAACTGCCGTGCATATCTTACAAGTTGTACGAGAAACTGCGCAAATAAATAAAATAAGTGTCACGAGTCTATGAGGTCGCTTCACGACCTCATATGTTGAAATAAACCTGAAAAGTAGTGGTTTTTGGTACTTTTGAAGTTAAGTACATCAAGTAAATACCACAATTATTCTCCTTGCTGTTTAAAAAAGGAAAAATACCCTTTTATTTTTCGATAATGCTGAGGCTTTAAAAATCAACAAGTTATAGTCTCCTTAAAAAATAAGGTATTTTTACTGATAGCAAAGTATGTGTTTGTAATTCATACTTTTTGTGCTAAAAATCAATA # Right flank : CTGCAAAAGTTGGATCCTGATTTTCATCAGGATGACGGTGAGCAGCGTGGTATTTAGGGTACTGCTGGTCAAATGCAACGGGTAAATTGTTCAAATAAAATCTACATGTAACAATGTTAAATGCATTGAAAAGACCGAAAAGACCGAAAAGAGCGTGTGTCTCATTTTTAATCAATTAAAGAGGAGTTTTACCTTCTATTTTTGCTCTTTTAAAATTTTTATAGAATACAAAGAGTTAAAATTATATGTTTTTAACAAGGTAAAAATGGGCTTTTTACCTTGTTAGTTTGTTGCAACTTATCTTTTTTCATTTATCTTATAGTTCACTGCCGTACAGGCAGCTTAGAAATTGAGTGGATCCAAGGCGAAGATAATCCGTTTGTTCACTGCCGTACAGGCAGCTTAGAAATATGTCCGATTTATTTAATGTGAGTAAAAAGTGTTCACTGCCGTACAGGCAGCTTAGAAACCAAAATCCGCGTAAATCGCCGCCTTAAATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //