Array 1 186296-186934 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXW02000007.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0047 NODE_7_length_267011_cov_14.366411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186296 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 186357 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 186418 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 186479 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 186541 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 186602 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 186663 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 186724 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 186785 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 186846 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 186907 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203686-206460 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXW02000007.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0047 NODE_7_length_267011_cov_14.366411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203686 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 203747 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 203808 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 203869 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 203930 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 203991 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 204052 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 204113 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 204174 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 204235 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 204296 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 204357 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 204418 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 204479 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 204540 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 204601 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 204662 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 204723 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 204784 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 204845 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 204906 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 204967 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 205028 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 205089 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 205150 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 205211 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 205272 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 205333 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 205394 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 205455 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 205516 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205577 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205638 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 205699 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 205760 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 205821 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 205882 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 205943 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 206004 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 206065 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 206126 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 206187 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 206248 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 206309 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 206370 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 206431 29 96.6 0 ............T................ | A [206458] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //