Array 1 467386-468755 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJA02000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain NY_FSL S10-1757 NODE_2_length_763333_cov_42.6935_ID_2733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 467386 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 467447 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 467508 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 467569 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 467630 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 467691 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 467752 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 467813 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 467874 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 467935 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 467996 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 468057 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 468118 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 468179 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 468240 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 468301 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 468362 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 468423 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 468484 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 468545 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 468606 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 468667 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 468728 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 485379-489252 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJA02000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain NY_FSL S10-1757 NODE_2_length_763333_cov_42.6935_ID_2733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 485379 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 485440 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 485501 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 485562 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 485623 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 485684 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 485745 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 485806 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 485867 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 485928 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 485989 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 486050 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 486111 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 486172 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 486233 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 486294 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 486355 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 486416 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 486477 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 486538 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 486599 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 486660 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 486721 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 486782 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 486843 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 486904 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 486965 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 487026 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 487087 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 487148 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 487209 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 487270 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 487331 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 487392 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 487453 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 487514 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 487575 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 487636 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 487697 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 487758 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 487819 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 487880 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 487941 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 488002 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 488063 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 488124 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 488185 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 488246 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 488307 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 488368 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 488429 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 488490 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 488551 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 488612 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 488673 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 488734 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 488795 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 488856 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 488917 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 488978 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 489039 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 489100 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 489162 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 489223 29 96.6 0 ............T................ | A [489250] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //