Array 1 88348-89901 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXME01000008.1 Salmonella enterica strain BCW_1769 NODE_8_length_213792_cov_2.88572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88348 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88409 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88470 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88531 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88592 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88653 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88714 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88775 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88836 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88897 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88958 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89019 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89080 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89141 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89202 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89263 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 89324 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89386 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89447 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89508 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89569 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89630 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89691 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89752 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89813 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89874 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106034-107510 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXME01000008.1 Salmonella enterica strain BCW_1769 NODE_8_length_213792_cov_2.88572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 106034 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106095 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106157 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106218 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106279 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106340 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106401 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106462 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106523 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106584 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106645 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106706 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106767 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106829 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106932 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106993 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107054 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107115 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107176 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107237 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107298 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107359 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107420 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107481 29 96.6 0 A............................ | A [107507] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //